Ryan Wick
Ryan Wick
Verified email at monash.edu - Homepage
Title
Cited by
Cited by
Year
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
RR Wick, LM Judd, CL Gorrie, KE Holt
PLoS computational biology 13 (6), e1005595, 2017
13632017
Bandage: interactive visualization of de novo genome assemblies
RR Wick, MB Schultz, J Zobel, KE Holt
Bioinformatics 31 (20), 3350-3352, 2015
6192015
Completing bacterial genome assemblies with multiplex MinION sequencing
RR Wick, LM Judd, CL Gorrie, KE Holt
Microbial genomics 3 (10), 2017
202*2017
Identification of Klebsiella capsule synthesis loci from whole genome data
KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ...
Microbial genomics 2 (12), 2016
175*2016
Performance of neural network basecalling tools for Oxford Nanopore sequencing
RR Wick, LM Judd, KE Holt
Genome biology 20 (1), 1-10, 2019
1692019
Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients
CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ...
Clinical infectious diseases 65 (2), 208-215, 2017
1602017
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ...
Microbial genomics 4 (9), 2018
872018
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ...
Nature communications 9 (1), 1-10, 2018
792018
Microbial mercury methylation in Antarctic sea ice
CM Gionfriddo, MT Tate, RR Wick, MB Schultz, A Zemla, MP Thelen, ...
Nature microbiology 1 (10), 1-12, 2016
792016
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ...
BMC genomics 16 (1), 1-11, 2015
772015
Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes
RR Wick, E Heinz, KE Holt, KL Wyres
Journal of clinical microbiology 56 (6), 2018
762018
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
RR Wick, LM Judd, KE Holt
PLoS computational biology 14 (11), e1006583, 2018
662018
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ...
PLoS genetics 15 (4), e1008114, 2019
592019
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...
Microbial genomics 5 (9), 2019
562019
Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
KL Wyres, J Hawkey, MAK Hetland, A Fostervold, RR Wick, LM Judd, ...
Journal of Antimicrobial Chemotherapy 74 (3), 577-581, 2019
532019
Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate
DP Thanh, HT Tuyen, TNT Nguyen, HC The, RR Wick, GE Thwaites, ...
Journal of Antimicrobial Chemotherapy 71 (8), 2314, 2016
472016
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
MMC Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt
Genome medicine 10 (1), 1-15, 2018
452018
Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital
CL Gorrie, M Mirceta, RR Wick, LM Judd, KL Wyres, NR Thomson, ...
Clinical infectious diseases 67 (2), 161-170, 2018
442018
Porechop
R Wick
Github https://github. com/rrwick/Porechop, 2017
432017
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward
MB Schultz, DP Thanh, NT Do Hoan, RR Wick, DJ Ingle, J Hawkey, ...
Microbial genomics 2 (3), 2016
422016
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Articles 1–20