| Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLoS computational biology 13 (6), e1005595, 2017 | 606 | 2017 |
| Bandage: interactive visualization of de novo genome assemblies RR Wick, MB Schultz, J Zobel, KE Holt Bioinformatics 31 (20), 3350-3352, 2015 | 365 | 2015 |
| Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial genomics 3 (10), 2017 | 119 | 2017 |
| Identification of Klebsiella capsule synthesis loci from whole genome data KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ... Microbial genomics 2 (12), 2016 | 103* | 2016 |
| Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ... Clinical Infectious Diseases 65 (2), 208-215, 2017 | 90 | 2017 |
| ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ... BMC genomics 16 (1), 667, 2015 | 59 | 2015 |
| Microbial mercury methylation in Antarctic sea ice CM Gionfriddo, MT Tate, RR Wick, MB Schultz, A Zemla, MP Thelen, ... Nature microbiology 1 (10), 16127, 2016 | 49 | 2016 |
| Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate D Pham Thanh, H Thanh Tuyen, T Nguyen Thi Nguyen, H Chung The, ... Journal of Antimicrobial Chemotherapy 71 (8), 2314-2317, 2016 | 44 | 2016 |
| Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ... Microbial genomics 4 (9), 2018 | 43 | 2018 |
| Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ... Nature communications 9 (1), 1-10, 2018 | 35 | 2018 |
| Performance of neural network basecalling tools for Oxford Nanopore sequencing RR Wick, LM Judd, KE Holt Genome biology 20 (1), 129, 2019 | 30 | 2019 |
| Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward MB Schultz, DP Thanh, NT Do Hoan, RR Wick, DJ Ingle, J Hawkey, ... Microbial genomics 2 (3), 2016 | 30 | 2016 |
| Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital CL Gorrie, M Mirceta, RR Wick, LM Judd, KL Wyres, NR Thomson, ... Clinical infectious diseases 67 (2), 161-170, 2018 | 29 | 2018 |
| Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes RR Wick, E Heinz, KE Holt, KL Wyres Journal of clinical microbiology 56 (6), e00197-18, 2018 | 27 | 2018 |
| Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks RR Wick, LM Judd, KE Holt PLoS computational biology 14 (11), 2018 | 21 | 2018 |
| Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307 KL Wyres, J Hawkey, MAK Hetland, A Fostervold, RR Wick, LM Judd, ... Journal of Antimicrobial Chemotherapy 74 (3), 577-581, 2019 | 18 | 2019 |
| Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ... PLoS genetics 15 (4), e1008114, 2019 | 16 | 2019 |
| Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection J Hawkey, DB Ascher, LM Judd, RR Wick, X Kostoulias, H Cleland, ... Microbial genomics 4 (3), 2018 | 15 | 2018 |
| Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae MMC Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt Genome medicine 10 (1), 77, 2018 | 11 | 2018 |
| Comparison of Oxford Nanopore basecalling tools RR Wick, LM Judd, KE Holt January. https://doi. org 10, 2018 | 11 | 2018 |
Kathryn HoltMonash University & LSHTMVerified email at lshtm.ac.uk
