| Unicycler: resolving bacterial genome assemblies from short and long sequencing reads RR Wick, LM Judd, CL Gorrie, KE Holt PLoS computational biology 13 (6), e1005595, 2017 | 398 | 2017 |
| Bandage: interactive visualization of de novo genome assemblies RR Wick, MB Schultz, J Zobel, KE Holt Bioinformatics 31 (20), 3350-3352, 2015 | 267 | 2015 |
| Completing bacterial genome assemblies with multiplex MinION sequencing RR Wick, LM Judd, CL Gorrie, KE Holt Microbial genomics 3 (10), 2017 | 84 | 2017 |
| Identification of Klebsiella capsule synthesis loci from whole genome data KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ... Microbial genomics 2 (12), 2016 | 76* | 2016 |
| Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ... Clinical Infectious Diseases 65 (2), 208-215, 2017 | 69 | 2017 |
| ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ... BMC genomics 16 (1), 667, 2015 | 48 | 2015 |
| Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate D Pham Thanh, H Thanh Tuyen, T Nguyen Thi Nguyen, H Chung The, ... Journal of Antimicrobial Chemotherapy 71 (8), 2314-2317, 2016 | 41 | 2016 |
| Microbial mercury methylation in Antarctic sea ice CM Gionfriddo, MT Tate, RR Wick, MB Schultz, A Zemla, MP Thelen, ... Nature microbiology 1 (10), 16127, 2016 | 39 | 2016 |
| Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ... Microbial genomics 4 (9), 2018 | 33 | 2018 |
| Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward MB Schultz, DP Thanh, NT Do Hoan, RR Wick, DJ Ingle, J Hawkey, ... Microbial genomics 2 (3), 2016 | 26 | 2016 |
| Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ... Nature communications 9 (1), 2703, 2018 | 24 | 2018 |
| Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital CL Gorrie, M Mirceta, RR Wick, LM Judd, KL Wyres, NR Thomson, ... Clinical Infectious Diseases 67 (2), 161-170, 2018 | 21 | 2018 |
| Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes RR Wick, E Heinz, KE Holt, KL Wyres Journal of clinical microbiology 56 (6), e00197-18, 2018 | 15 | 2018 |
| Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection J Hawkey, DB Ascher, LM Judd, RR Wick, X Kostoulias, H Cleland, ... Microbial genomics 4 (3), 2018 | 13 | 2018 |
| Comparison of Oxford Nanopore basecalling tools RR Wick, LM Judd, KE Holt Comparison of Oxford Nanopore basecalling tools, 2018 | 12 | 2018 |
| Frequent emergence of pathogenic lineages of Klebsiella pneumoniae via mobilisation of yersiniabactin and colibactin MMC Lam, RR Wick, KL Wyres, C Gorrie, LM Judd, S Brisse, A Jenney, ... bioRxiv, 098178, 2017 | 10 | 2017 |
| Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae MMC Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt Genome medicine 10 (1), 77, 2018 | 9 | 2018 |
| Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks RR Wick, LM Judd, KE Holt PLoS computational biology 14 (11), e1006583, 2018 | 9 | 2018 |
| Comparison of oxford nanopore basecalling tools; 2017 RR Wick, LM Judd, KE Holt URL https://doi. org/10.5281/zenodo 1082696, 2018 | 9 | 2018 |
| Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ... PLoS genetics 15 (4), e1008114, 2019 | 8 | 2019 |
Kathryn HoltMonash University & LSHTMVerified email at lshtm.ac.uk