Ryan Wick
Ryan Wick
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Cited by
Cited by
Unicycler: resolving bacterial genome assemblies from short and long sequencing reads
RR Wick, LM Judd, CL Gorrie, KE Holt
PLoS computational biology 13 (6), e1005595, 2017
Bandage: interactive visualization of de novo genome assemblies
RR Wick, MB Schultz, J Zobel, KE Holt
Bioinformatics 31 (20), 3350-3352, 2015
Performance of neural network basecalling tools for Oxford Nanopore sequencing
RR Wick, LM Judd, KE Holt
Genome biology 20, 1-10, 2019
Completing bacterial genome assemblies with multiplex MinION sequencing
RR Wick, LM Judd, CL Gorrie, KE Holt
Microbial genomics 3 (10), e000132, 2017
A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex
MMC Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt
Nature communications 12 (1), 4188, 2021
Gastrointestinal carriage is a major reservoir of Klebsiella pneumoniae infection in intensive care patients
CL Gorrie, M Mirčeta, RR Wick, DJ Edwards, NR Thomson, RA Strugnell, ...
Clinical infectious diseases 65 (2), 208-215, 2017
Identification of Klebsiella capsule synthesis loci from whole genome data
KL Wyres, RR Wick, C Gorrie, A Jenney, R Follador, NR Thomson, ...
Microbial genomics 2 (12), e000102, 2016
Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations
MMC Lam, RR Wick, KL Wyres, CL Gorrie, LM Judd, AWJ Jenney, ...
Microbial genomics 4 (9), e000196, 2018
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ...
PLoS genetics 15 (4), e1008114, 2019
Kaptive Web: user-friendly capsule and lipopolysaccharide serotype prediction for Klebsiella genomes
RR Wick, E Heinz, KE Holt, KL Wyres
Journal of clinical microbiology 56 (6), 10.1128/jcm. 00197-18, 2018
Polypolish: short-read polishing of long-read bacterial genome assemblies
RR Wick, KE Holt
PLoS computational biology 18 (1), e1009802, 2022
Benchmarking of long-read assemblers for prokaryote whole genome sequencing
RR Wick, KE Holt
F1000Research 8, 2019
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, ...
Microbial genomics 5 (9), e000294, 2019
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ...
Nature communications 9 (1), 2703, 2018
Trycycler: consensus long-read assemblies for bacterial genomes
RR Wick, LM Judd, LT Cerdeira, J Hawkey, G Méric, B Vezina, KL Wyres, ...
Genome biology 22, 1-17, 2021
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae
MMC Lam, KL Wyres, LM Judd, RR Wick, A Jenney, S Brisse, KE Holt
Genome medicine 10, 1-15, 2018
Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks
RR Wick, LM Judd, KE Holt
PLoS computational biology 14 (11), e1006583, 2018
Microbial mercury methylation in Antarctic sea ice
CM Gionfriddo, MT Tate, RR Wick, MB Schultz, A Zemla, MP Thelen, ...
Nature microbiology 1 (10), 1-12, 2016
Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307
KL Wyres, J Hawkey, MAK Hetland, A Fostervold, RR Wick, LM Judd, ...
Journal of Antimicrobial Chemotherapy 74 (3), 577-581, 2019
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data
J Hawkey, M Hamidian, RR Wick, DJ Edwards, H Billman-Jacobe, ...
BMC genomics 16, 1-11, 2015
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