Follow
Debswapna Bhattacharya
Debswapna Bhattacharya
Associate Professor of Computer Science at Virginia Tech
Verified email at vt.edu - Homepage
Title
Cited by
Cited by
Year
3Drefine: an interactive web server for efficient protein structure refinement
D Bhattacharya, J Nowotny, R Cao, J Cheng
Nucleic acids research 44 (W1), W406-W409, 2016
3832016
3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic‐level energy minimization
D Bhattacharya, J Cheng
Proteins: Structure, Function, and Bioinformatics 81 (1), 119-131, 2013
2162013
CONFOLD: Residue‐residue contact‐guided ab initio protein folding
B Adhikari, D Bhattacharya, R Cao, J Cheng
Proteins: Structure, Function, and Bioinformatics 83 (8), 1436-1449, 2015
1832015
DeepQA: improving the estimation of single protein model quality with deep belief networks
R Cao, D Bhattacharya, J Hou, J Cheng
BMC bioinformatics 17, 1-9, 2016
1682016
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques
R Cao, B Adhikari, D Bhattacharya, M Sun, J Hou, J Cheng
Bioinformatics 33 (4), 586-588, 2017
932017
Large-scale model quality assessment for improving protein tertiary structure prediction
R Cao, D Bhattacharya, B Adhikari, J Li, J Cheng
Bioinformatics 31 (12), i116-i123, 2015
652015
i3Drefine software for protein 3D structure refinement and its assessment in CASP10
D Bhattacharya, J Cheng
PloS one 8 (7), e69648, 2013
612013
UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling
D Bhattacharya, R Cao, J Cheng
Bioinformatics 32 (18), 2791-2799, 2016
452016
QDeep: distance-based protein model quality estimation by residue-level ensemble error classifications using stacked deep residual neural networks
MH Shuvo, S Bhattacharya, D Bhattacharya
Bioinformatics 36 (Supplement_1), i285–i291, 2020
312020
refineD: improved protein structure refinement using machine learning based restrained relaxation
D Bhattacharya
Bioinformatics 35 (18), 3320-3328, 2019
302019
De novo protein conformational sampling using a probabilistic graphical model
D Bhattacharya, J Cheng
Scientific reports 5 (1), 16332, 2015
282015
ConEVA: a toolbox for comprehensive assessment of protein contacts
B Adhikari, J Nowotny, D Bhattacharya, J Hou, J Cheng
BMC bioinformatics 17, 1-12, 2016
272016
Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11
R Cao, D Bhattacharya, B Adhikari, J Li, J Cheng
Proteins: Structure, Function, and Bioinformatics 84, 247-259, 2016
252016
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific reports 8 (1), 9939, 2018
232018
DeepRefiner: High-accuracy protein structure refinement by deep network calibration
MH Shuvo, M Gulfam, D Bhattacharya
Nucleic Acids Research 49 (W1), W147-W152, 2021
212021
Modeling SARS‐CoV2 proteins in the CASP‐commons experiment
A Kryshtafovych, J Moult, et al.
PROTEINS : Structure, Function, and Bioinformatics, 2021
192021
The MULTICOM protein tertiary structure prediction system
J Li, D Bhattacharya, R Cao, B Adhikari, X Deng, J Eickholt, J Cheng
Protein Structure Prediction, 29-41, 2014
182014
Generating field-based inventory of earthquake-induced landslides in the Himalayas-an aftermath of the 18 September 2011 Sikkim Earthquake
S Ghosh, I Chakraborty, D Bhattacharya, A Bora, A Kumar
Indian Journal of Geosciences 66 (1), 27-38, 2012
162012
DisCovER: distance‐and orientation‐based covariational threading for weakly homologous proteins
S Bhattacharya, R Roche, B Moussad, D Bhattacharya
Proteins: Structure, Function, and Bioinformatics 90 (2), 579-588, 2022
122022
Evaluating the significance of contact maps in low-homology protein modeling using contact-assisted threading
S Bhattacharya, D Bhattacharya
Scientific Reports 10 (1), 2908, 2020
122020
The system can't perform the operation now. Try again later.
Articles 1–20