| Combination of interval-valued fuzzy set and soft set X Yang, TY Lin, J Yang, Y Li, D Yu Computers & Mathematics with Applications 58 (3), 521-527, 2009 | 636 | 2009 |
| pRNAm-PC: Predicting N6-methyladenosine sites in RNA sequences via physical–chemical properties Z Liu, X Xiao, DJ Yu, J Jia, WR Qiu, KC Chou Analytical biochemistry 497, 60-67, 2016 | 280 | 2016 |
| Dominance-based rough set approach and knowledge reductions in incomplete ordered information system X Yang, J Yang, C Wu, D Yu Information Sciences 178 (4), 1219-1234, 2008 | 265 | 2008 |
| Dominance-based rough set approach to incomplete interval-valued information system X Yang, D Yu, J Yang, L Wei Data & Knowledge Engineering 68 (11), 1331-1347, 2009 | 179 | 2009 |
| Multi-label learning with label-specific feature reduction S Xu, X Yang, H Yu, DJ Yu, J Yang, ECC Tsang Knowledge-Based Systems 104, 52-61, 2016 | 159 | 2016 |
| ResPRE: high-accuracy protein contact prediction by coupling precision matrix with deep residual neural networks Y Li, J Hu, C Zhang, DJ Yu, Y Zhang Bioinformatics 35 (22), 4647-4655, 2019 | 153 | 2019 |
| Generalization of soft set theory: from crisp to fuzzy case X Yang, D Yu, J Yang, C Wu Fuzzy Information and Engineering: Proceedings of the Second International …, 2007 | 142 | 2007 |
| Designing template-free predictor for targeting protein-ligand binding sites with classifier ensemble and spatial clustering DJ Yu, J Hu, J Yang, HB Shen, J Tang, JY Yang IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013 | 117 | 2013 |
| Protein–protein interaction sites prediction by ensembling SVM and sample-weighted random forests ZS Wei, K Han, JY Yang, HB Shen, DJ Yu Neurocomputing 193, 201-212, 2016 | 113 | 2016 |
| Ensembling multiple raw coevolutionary features with deep residual neural networks for contact‐map prediction in CASP13 Y Li, C Zhang, EW Bell, DJ Yu, Y Zhang Proteins: Structure, Function, and Bioinformatics 87 (12), 1082-1091, 2019 | 104 | 2019 |
| An efficient renovation on kernel Fisher discriminant analysis and face recognition experiments Y Xu, J Yang, J Lu, D Yu Pattern Recognition 37 (10), 2091-2094, 2004 | 97 | 2004 |
| Improving protein-ATP binding residues prediction by boosting SVMs with random under-sampling DJ Yu, J Hu, ZM Tang, HB Shen, J Yang, JY Yang Neurocomputing 104, 180-190, 2013 | 90 | 2013 |
| Least squares twin bounded support vector machines based on L1-norm distance metric for classification H Yan, Q Ye, T Zhang, DJ Yu, X Yuan, Y Xu, L Fu Pattern recognition 74, 434-447, 2018 | 89 | 2018 |
| TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine GQ Li, Z Liu, HB Shen, DJ Yu IEEE transactions on nanobioscience 15 (7), 674-682, 2016 | 82 | 2016 |
| Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks Y Li, C Zhang, EW Bell, W Zheng, X Zhou, DJ Yu, Y Zhang PLoS computational biology 17 (3), e1008865, 2021 | 81 | 2021 |
| α-Dominance relation and rough sets in interval-valued information systems X Yang, Y Qi, DJ Yu, H Yu, J Yang Information Sciences 294, 334-347, 2015 | 81 | 2015 |
| TargetATPsite: A template‐free method for ATP‐binding sites prediction with residue evolution image sparse representation and classifier ensemble DJ Yu, J Hu, Y Huang, HB Shen, Y Qi, ZM Tang, JY Yang Journal of computational chemistry 34 (11), 974-985, 2013 | 78 | 2013 |
| Predicting protein-DNA binding residues by weightedly combining sequence-based features and boosting multiple SVMs J Hu, Y Li, M Zhang, X Yang, HB Shen, DJ Yu IEEE/ACM transactions on computational biology and bioinformatics 14 (6 …, 2016 | 77 | 2016 |
| Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides J Xu, F Li, A Leier, D Xiang, HH Shen, TT Marquez Lago, J Li, DJ Yu, ... Briefings in bioinformatics 22 (5), bbab083, 2021 | 69 | 2021 |
| LS-align: an atom-level, flexible ligand structural alignment algorithm for high-throughput virtual screening J Hu, Z Liu, DJ Yu, Y Zhang Bioinformatics 34 (13), 2209-2218, 2018 | 69 | 2018 |
