| deepTools2: a next generation web server for deep-sequencing data analysis F Ramírez, DP Ryan, B Grüning, V Bhardwaj, F Kilpert, AS Richter, ... Nucleic acids research 44 (Web Server issue), W160, 2016 | 6122 | 2016 |
| deepTools: a flexible platform for exploring deep-sequencing data F Ramírez, F Dündar, S Diehl, BA Grüning, T Manke Nucleic acids research 42 (W1), W187-W191, 2014 | 2855 | 2014 |
| High-resolution TADs reveal DNA sequences underlying genome organization in flies F Ramírez, V Bhardwaj, L Arrigoni, KC Lam, BA Grüning, J Villaveces, ... Nature communications 9 (1), 189, 2018 | 773 | 2018 |
| The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ... Cell 167 (5), 1145-1149, 2016 | 546 | 2016 |
| DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj, C Pessoa Rodrigues, ... Nature 544 (7648), 115-119, 2017 | 499 | 2017 |
| Suv39h-dependent H3K9me3 marks intact retrotransposons and silences LINE elements in mouse embryonic stem cells A Bulut-Karslioglu, A Inti, F Ramirez, M Barenboim, M Onishi-Seebacher, ... Molecular cell 55 (2), 277-290, 2014 | 347 | 2014 |
| pyGenomeTracks: reproducible plots for multivariate genomic datasets L Lopez-Delisle, L Rabbani, J Wolff, V Bhardwaj, R Backofen, B Grüning, ... Bioinformatics 37 (3), 422-423, 2021 | 322 | 2021 |
| Robustness and network evolution—an entropic principle L Demetrius, T Manke Physica A: Statistical Mechanics and its Applications 346 (3-4), 682-696, 2005 | 274 | 2005 |
| Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization J Wolff, L Rabbani, R Gilsbach, G Richard, T Manke, R Backofen, ... Nucleic acids research 48 (W1), W177-W184, 2020 | 255 | 2020 |
| Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs M Thomas-Chollier, A Hufton, M Heinig, S O'keeffe, NE Masri, HG Roider, ... Nature protocols 6 (12), 1860-1869, 2011 | 251 | 2011 |
| Predicting transcription factor affinities to DNA from a biophysical model HG Roider, A Kanhere, T Manke, M Vingron Bioinformatics 23 (2), 134-141, 2007 | 248 | 2007 |
| A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis AS Schaefer, GM Richter, M Nothnagel, T Manke, H Dommisch, G Jacobs, ... Human molecular genetics 19 (3), 553-562, 2010 | 229 | 2010 |
| Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization J Wolff, V Bhardwaj, S Nothjunge, G Richard, G Renschler, R Gilsbach, ... Nucleic acids research 46 (W1), W11-W16, 2018 | 204 | 2018 |
| Epigenomic profiling of human CD4+ T cells supports a linear differentiation model and highlights molecular regulators of memory development P Durek, K Nordström, G Gasparoni, A Salhab, C Kressler, M De Almeida, ... Immunity 45 (5), 1148-1161, 2016 | 204 | 2016 |
| The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle HJ Warnatz, D Schmidt, T Manke, I Piccini, M Sultan, T Borodina, ... Journal of Biological Chemistry 286 (26), 23521-23532, 2011 | 203 | 2011 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 200 | 2018 |
| A transcription factor–based mechanism for mouse heterochromatin formation A Bulut-Karslioglu, V Perrera, M Scaranaro, IA De La Rosa-velazquez, ... Nature structural & molecular biology 19 (10), 1023-1030, 2012 | 196 | 2012 |
| Nuclear architecture organized by Rif1 underpins the replication-timing program R Foti, S Gnan, D Cornacchia, V Dileep, A Bulut-Karslioglu, S Diehl, ... Molecular cell 61 (2), 260-273, 2016 | 189 | 2016 |
| PASTAA: identifying transcription factors associated with sets of co-regulated genes HG Roider, T Manke, S O'Keeffe, M Vingron, SA Haas Bioinformatics 25 (4), 435-442, 2009 | 177 | 2009 |
| Mutational characterization of the bile acid receptor TGR5 in primary sclerosing cholangitis JR Hov, V Keitel, JK Laerdahl, L Spomer, E Ellinghaus, A ElSharawy, ... PloS one 5 (8), e12403, 2010 | 147 | 2010 |
Fidel RamirezBoehringer IngelheimVerified email at boehringer-ingelheim.com
