Mohamed Helmy
Mohamed Helmy
Senior Specialist at Bioinformatics Institute (BII), A*STAR
Verified email at - Homepage
Cited by
Cited by
Pan-cancer analysis of whole genomes
I The, TPCA of Whole, Genomes Consortium
Nature 578 (7793), 82, 2020
Potential biotechnological strategies for the cleanup of heavy metals and metalloids
KA Mosa, I Saadoun, K Kumar, M Helmy, OP Dhankher
Frontiers in plant science 7, 303, 2016
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ...
Nature 578 (7793), 102-111, 2020
Next-generation sequence assembly: four stages of data processing and computational challenges
S El-Metwally, T Hamza, M Zakaria, M Helmy
PLoS Comput Biol 9 (12), e1003345, 2013
A reference map of the human binary protein interactome
K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ...
Nature 580 (7803), 402-408, 2020
OryzaPG-DB: rice proteome database based on shotgun proteogenomics
M Helmy, M Tomita, Y Ishihama
BMC plant biology 11 (1), 1-9, 2011
Next generation sequencing technologies and challenges in sequence assembly
S El-Metwally, OM Ouda, M Helmy
Springer Nature, 2014
New horizons in next-generation sequencing
S El-Metwally, OM Ouda, M Helmy
Next Generation Sequencing Technologies and Challenges in Sequence Assembly …, 2014
Signaling flux redistribution at toll-like receptor pathway junctions
K Selvarajoo, Y Takada, J Gohda, M Helmy, S Akira, M Tomita, ...
PLoS One 3 (10), e3430, 2008
Limited resources of genome sequencing in developing countries: challenges and solutions
M Helmy, M Awad, KA Mosa
Applied & translational genomics 9, 15-19, 2016
Predicting novel features of toll-like receptor 3 signaling in macrophages
M Helmy, J Gohda, J Inoue, M Tomita, M Tsuchiya, K Selvarajoo
PLoS One 4 (3), e4661, 2009
Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Genes to Cells 17 (8), 633-644, 2012
Pathway and network analysis of more than 2500 whole cancer genomes
MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ...
Nature communications 11 (1), 1-17, 2020
Integrative pathway enrichment analysis of multivariate omics data
M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ...
Nature communications 11 (1), 1-16, 2020
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
J Carlevaro-Fita, A Lanzós, L Feuerbach, C Hong, D Mas-Ponte, ...
Communications biology 3 (1), 1-16, 2020
Ten simple rules for developing public biological databases
M Helmy, A Crits-Christoph, GD Bader
PLoS computational biology 12 (11), e1005128, 2016
Peptide identification by searching large-scale tandem mass spectra against large databases: bioinformatics methods in proteogenomics
M Helmy, M Tomita, Y Ishihama
Genes Genome Genomics 6, 76-85, 2012
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Genome biology 11 (1), 1-2, 2010
Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis
M Awad, RM Fahmy, KA Mosa, M Helmy, FA El-Feky
Computational Biology and Chemistry 71, 20-31, 2017
The rice proteogenomics database OryzaPG-DB: development, expansion, and new features
M Helmy, N Sugiyama, M Tomita, Y Ishihama
Frontiers in plant science 3, 65, 2012
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