Mohamed Helmy

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Kareem A. MosaAssistant Professor, University of Sharjah (UAE) & Al-Azhar University (Egypt)Verified email at sharjah.ac.ae
Sara El-Sayed El-MetwallyAssistant Professor, Faculty of Computers and Information, Mansoura University, Egypt.Verified email at mans.edu.eg
Yasushi IshihamaProfessor, Grad Schl of Pharm Sci, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
Osama M. OudaAssociate Professor of Computer Science, Jouf UniversityVerified email at ju.edu.sa
Kumar SelvarajooBioinformatics Institute, A*STARVerified email at bii.a-star.edu.sg
Mohamed AwadDepartment of Comparative Development and Genetics. Max Planck Institute for Plant Breeding ResearchVerified email at azhar.edu.eg
Ahmed IsmailAssistant Professor of Bio & health informatics, Public health Department, College of AppliedVerified email at mu.edu.sa
Naoyuki SugiyamaGraduate School of Phermaceutical Sciences, Kyoto UniversityVerified email at pharm.kyoto-u.ac.jp
The Prince Charles Hospital Staff Publ...The Prince Charles HospitalVerified email at health.qld.gov.au
Om Parkash DhankherUniversity of Massachusetts AmherstVerified email at umass.edu
Kundan KumarBirla Institute of Technology & Science Pilani, K. K. Birla Goa CampusVerified email at goa.bits-pilani.ac.in
Ismail SaadounUniversity of SharjahVerified email at sharjah.ac.ae
Jun-ichiro InoueThe Institute of Medical Science, The University of TokyoVerified email at ims.u-tokyo.ac.jp
fawzy El-FekyProfessor of Biotechnology and Genetics. Biotechnology Sept. , Al-Azhar universityVerified email at azhar.edu.eg
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
Paul C. BoutrosUniversity of California, Los AngelesVerified email at mednet.ucla.edu
Shizuo AkiraOsaka UniversityVerified email at biken.osaka-u.ac.jp
Koichi MatsuoKeio University School of MedicineVerified email at keio.jp
Alexander Crits-ChristophUniversity of California, BerkeleyVerified email at berkeley.edu
Jüri ReimandOntario Institute for Cancer Research, University of TorontoVerified email at utoronto.ca

Mohamed Helmy

Senior Specialist at Bioinformatics Institute (BII), A*STAR

Verified email at sifbi.a-star.edu.sg - Homepage

Computational Biology/Bioinformatics Cancer Genomics Systems Biology Proteogenomics Personalized Medicine


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020	367	2020
Potential biotechnological strategies for the cleanup of heavy metals and metalloids KA Mosa, I Saadoun, K Kumar, M Helmy, OP Dhankher Frontiers in plant science 7, 303, 2016	209	2016
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020	150	2020
Next-generation sequence assembly: four stages of data processing and computational challenges S El-Metwally, T Hamza, M Zakaria, M Helmy PLoS Comput Biol 9 (12), e1003345, 2013	148	2013
A reference map of the human binary protein interactome K Luck, DK Kim, L Lambourne, K Spirohn, BE Begg, W Bian, R Brignall, ... Nature 580 (7803), 402-408, 2020	134*	2020
OryzaPG-DB: rice proteome database based on shotgun proteogenomics M Helmy, M Tomita, Y Ishihama BMC plant biology 11 (1), 1-9, 2011	64	2011
Next generation sequencing technologies and challenges in sequence assembly S El-Metwally, OM Ouda, M Helmy Springer Nature, 2014	59*	2014
New horizons in next-generation sequencing S El-Metwally, OM Ouda, M Helmy Next Generation Sequencing Technologies and Challenges in Sequence Assembly …, 2014	59	2014
Signaling flux redistribution at toll-like receptor pathway junctions K Selvarajoo, Y Takada, J Gohda, M Helmy, S Akira, M Tomita, ... PLoS One 3 (10), e3430, 2008	55	2008
Limited resources of genome sequencing in developing countries: challenges and solutions M Helmy, M Awad, KA Mosa Applied & translational genomics 9, 15-19, 2016	53	2016
Predicting novel features of toll-like receptor 3 signaling in macrophages M Helmy, J Gohda, J Inoue, M Tomita, M Tsuchiya, K Selvarajoo PLoS One 4 (3), e4661, 2009	34	2009
Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics M Helmy, N Sugiyama, M Tomita, Y Ishihama Genes to Cells 17 (8), 633-644, 2012	28	2012
Pathway and network analysis of more than 2500 whole cancer genomes MA Reyna, D Haan, M Paczkowska, LPC Verbeke, M Vazquez, ... Nature communications 11 (1), 1-17, 2020	26	2020
Integrative pathway enrichment analysis of multivariate omics data M Paczkowska, J Barenboim, N Sintupisut, NS Fox, H Zhu, D Abd-Rabbo, ... Nature communications 11 (1), 1-16, 2020	24	2020
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis J Carlevaro-Fita, A Lanzós, L Feuerbach, C Hong, D Mas-Ponte, ... Communications biology 3 (1), 1-16, 2020	24	2020
Ten simple rules for developing public biological databases M Helmy, A Crits-Christoph, GD Bader PLoS computational biology 12 (11), e1005128, 2016	22	2016
Peptide identification by searching large-scale tandem mass spectra against large databases: bioinformatics methods in proteogenomics M Helmy, M Tomita, Y Ishihama Genes Genome Genomics 6, 76-85, 2012	22	2012
Onco-proteogenomics: a novel approach to identify cancer-specific mutations combining proteomics and transcriptome deep sequencing M Helmy, N Sugiyama, M Tomita, Y Ishihama Genome biology 11 (1), 1-2, 2010	20	2010
Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis M Awad, RM Fahmy, KA Mosa, M Helmy, FA El-Feky Computational Biology and Chemistry 71, 20-31, 2017	16	2017
The rice proteogenomics database OryzaPG-DB: development, expansion, and new features M Helmy, N Sugiyama, M Tomita, Y Ishihama Frontiers in plant science 3, 65, 2012	15	2012

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