Sam Seaver
Title
Cited by
Cited by
Year
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566, 2018
2092018
Plant B vitamin pathways and their compartmentation: a guide for the perplexed
S Gerdes, C Lerma-Ortiz, O Frelin, SMD Seaver, CS Henry, ...
Journal of experimental botany 63 (15), 5379-5395, 2012
762012
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource
SMD Seaver, S Gerdes, O Frelin, C Lerma-Ortiz, LMT Bradbury, R Zallot, ...
Proceedings of the National Academy of Sciences 111 (26), 9645-9650, 2014
672014
Frontiers in metabolic reconstruction and modeling of plant genomes
SMD Seaver, CS Henry, AD Hanson
Journal of experimental botany 63 (6), 2247-2258, 2012
672012
Monster: inferring non-covalent interactions in macromolecular structures from atomic coordinate data
WJ Salerno, SM Seaver, BR Armstrong, I Radhakrishnan
Nucleic acids research 32 (suppl_2), W566-W568, 2004
432004
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
382016
Improved evidence-based genome-scale metabolic models for maize leaf, embryo, and endosperm
S Seaver, LMT Bradbury, O Frelin, R Zarecki, E Ruppin, AD Hanson, ...
Frontiers in plant science 6, 142, 2015
362015
Metabolomic profiling of the nectars of Aquilegia pubescens and A. canadensis
C Noutsos, AM Perera, BJ Nikolau, SMD Seaver, DH Ware
PLoS One 10 (5), e0124501, 2015
202015
The DOE systems biology knowledgebase (KBase). bioRxiv
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
112016
A pathway for every product? Tools to discover and design plant metabolism
JG Jeffryes, SMD Seaver, JP Faria, CS Henry
Plant Science 273, 61-70, 2018
102018
Micro-bias and macro-performance
SMD Seaver, AA Moreira, M Sales-Pardo, RD Malmgren, D Diermeier, ...
The European Physical Journal B 67 (3), 369-375, 2009
92009
The DOE systems biology knowledgebase (KBase). bioRxiv 096354
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
82016
PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
SMD Seaver, C Lerma‐Ortiz, N Conrad, A Mikaili, A Sreedasyam, ...
The Plant Journal 95 (6), 1102-1113, 2018
52018
Integration of plant metabolomics data with metabolic networks: progresses and challenges
N Töpfer, SMD Seaver, A Aharoni
Plant Metabolomics, 297-310, 2018
52018
Constructing and analyzing metabolic flux models of microbial communities
JP Faria, T Khazaei, JN Edirisinghe, P Weisenhorn, SMD Seaver, ...
Hydrocarbon and Lipid Microbiology Protocols, 247-273, 2016
52016
Correction: Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis
C Noutsos, AM Perera, BJ Nikolau, SMD Seaver, DH Ware
PloS one 10 (10), e0141384, 2015
12015
Phenomenological model for predicting the catabolic potential of an arbitrary nutrient
SMD Seaver, M Sales-Pardo, R Guimerà, LAN Amaral
PLoS Comput Biol 8 (11), e1002762, 2012
12012
The Complex Systems Section of EPJ B
F Schweitzer
The European Physical Journal B 67 (3), 269-270, 2009
12009
Social cognition in complex team networks
SMD Seaver, RD Malmgren, AA Moreira, M Sales-Pardo, D Diermeier, ...
Proceedings of the 2005 workshop on social agents, Argonne National …, 2006
12006
The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, J Edirisinghe, M Mundy, ...
BioRxiv, 2020
2020
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Articles 1–20