Feichen Shen, PhD
Feichen Shen, PhD
Sr. Principal Scientist, R&D at Bristol Myers Squibb | Assistant Professor at Mayo Clinic
Verified email at bms.com - Homepage
Title
Cited by
Cited by
Year
Clinical information extraction applications: a literature review
Y Wang, L Wang, M Rastegar-Mojarad, S Moon, F Shen, N Afzal, S Liu, ...
Journal of biomedical informatics 77, 34-49, 2018
3722018
A comparison of word embeddings for the biomedical natural language processing
Y Wang, S Liu, N Afzal, M Rastegar-Mojarad, L Wang, F Shen, ...
Journal of biomedical informatics 87, 12-20, 2018
2092018
A clinical text classification paradigm using weak supervision and deep representation
Y Wang, S Sohn, S Liu, F Shen, L Wang, EJ Atkinson, S Amin, H Liu
BMC medical informatics and decision making 19 (1), 1-13, 2019
602019
Deep phenotyping on electronic health records facilitates genetic diagnosis by clinical exomes
JH Son, G Xie, C Yuan, L Ena, Z Li, A Goldstein, L Huang, L Wang, ...
The American Journal of Human Genetics 103 (1), 58-73, 2018
592018
MedSTS: a resource for clinical semantic textual similarity
Y Wang, N Afzal, S Fu, L Wang, F Shen, M Rastegar-Mojarad, H Liu
Language Resources and Evaluation 54 (1), 57-72, 2020
502020
Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging Web ontology language (OWL) and cheminformatics approaches
Q Zhu, C Tao, F Shen, CG Chute
Biocomputing 2014, 172-182, 2014
392014
Dependency and AMR embeddings for drug-drug interaction extraction from biomedical literature
Y Wang, S Liu, M Rastegar-Mojarad, L Wang, F Shen, F Liu, H Liu
Proceedings of the 8th acm international conference on bioinformatics …, 2017
332017
Knowledge discovery from biomedical ontologies in cross domains
F Shen, Y Lee
PloS one 11 (8), e0160005, 2016
312016
Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data
N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang
AMIA Summits on Translational Science Proceedings 2018, 74, 2018
282018
Smartspace: Multiagent based distributed platform for semantic service discovery
S Dasgupta, A Aroor, F Shen, Y Lee
IEEE Transactions on Systems, Man, and Cybernetics: Systems 44 (7), 805-821, 2013
252013
Phenotypic analysis of clinical narratives using human phenotype ontology
F Shen, L Wang, H Liu
Studies in health technology and informatics 245, 581, 2017
242017
Overview of the BioCreative/OHNLP challenge 2018 task 2: clinical semantic textual similarity
Y Wang, N Afzal, S Liu, M Rastegar-Mojarad, L Wang, F Shen, S Fu, H Liu
Proceedings of the BioCreative/OHNLP Challenge 2018, 2018
232018
Clinical concept extraction: a methodology review
S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson, F Shen, L Wang, ...
Journal of Biomedical Informatics, 103526, 2020
222020
Leveraging collaborative filtering to accelerate rare disease diagnosis
F Shen, S Liu, Y Wang, L Wang, N Afzal, H Liu
AMIA Annual Symposium Proceedings 2017, 1554, 2017
222017
Extracting chemical–protein relations using attention-based neural networks
S Liu, F Shen, R Komandur Elayavilli, Y Wang, M Rastegar-Mojarad, ...
Database 2018, 2018
212018
Rare disease knowledge enrichment through a data-driven approach
F Shen, Y Zhao, L Wang, MR Mojarad, Y Wang, S Liu, H Liu
BMC medical informatics and decision making 19 (1), 1-11, 2019
202019
Collaborative mobile-cloud computing for civil infrastructure condition inspection
ZQ Chen, J Chen, F Shen, Y Lee
Journal of Computing in Civil Engineering 29 (5), 04014066, 2015
202015
Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data
N Hong, A Wen, F Shen, S Sohn, C Wang, H Liu, G Jiang
JAMIA open 2 (4), 570-579, 2019
182019
HPO2Vec+: leveraging heterogeneous knowledge resources to enrich node embeddings for the human phenotype ontology
F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu
Journal of biomedical informatics 96, 103246, 2019
182019
Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches
F Shen, S Liu, Y Wang, A Wen, L Wang, H Liu
JMIR medical informatics 6 (4), e11301, 2018
182018
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