| IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming K Sato, Y Kato, M Hamada, T Akutsu, K Asai Bioinformatics 27 (13), i85-i93, 2011 | 290 | 2011 |
| RactIP: fast and accurate prediction of RNA-RNA interaction using integer programming Y Kato, K Sato, M Hamada, Y Watanabe, K Asai, T Akutsu Bioinformatics 26 (18), i460-i466, 2010 | 84 | 2010 |
| Mutations in the adenosine deaminase ADAR1 that prevent endogenous Z-RNA binding induce Aicardi-Goutieres-syndrome-like encephalopathy T Nakahama, Y Kato, T Shibuya, M Inoue, JI Kim, T Vongpipatana, ... Immunity 54 (9), 1976-1988. e7, 2021 | 61 | 2021 |
| A grammatical approach to RNA–RNA interaction prediction Y Kato, T Akutsu, H Seki Pattern recognition 42 (4), 531-538, 2009 | 54 | 2009 |
| DAFS: simultaneous aligning and folding of RNA sequences via dual decomposition K Sato, Y Kato, T Akutsu, K Asai, Y Sakakibara Bioinformatics 28 (24), 3218-3224, 2012 | 51 | 2012 |
| A comparative analysis of ADAR mutant mice reveals site-specific regulation of RNA editing PHC Cruz, Y Kato, T Nakahama, T Shibuya, Y Kawahara Rna 26 (4), 454-469, 2020 | 48 | 2020 |
| ADAR 1‐mediated RNA editing is required for thymic self‐tolerance and inhibition of autoimmunity T Nakahama, Y Kato, JI Kim, T Vongpipatana, Y Suzuki, CR Walkley, ... EMBO reports 19 (12), e46303, 2018 | 47 | 2018 |
| RNA editing at a limited number of sites is sufficient to prevent MDA5 activation in the mouse brain JI Kim, T Nakahama, R Yamasaki, PH Costa Cruz, T Vongpipatana, ... PLoS genetics 17 (5), e1009516, 2021 | 44 | 2021 |
| RNA pseudoknotted structure prediction using stochastic multiple context-free grammar Y Kato, H Seki, T Kasami IPSJ Digital Courier 2, 655-664, 2006 | 41 | 2006 |
| Prediction of RNA secondary structure with pseudoknots using integer programming U Poolsap, Y Kato, T Akutsu BMC bioinformatics 10, 1-11, 2009 | 33 | 2009 |
| Prediction of RNA secondary structure including pseudoknots for long sequences K Sato, Y Kato Briefings in Bioinformatics 23 (1), bbab395, 2022 | 32 | 2022 |
| On the generative power of multiple context-free grammars and macro grammars H Seki, Y Kato IEICE Transactions on Information and Systems 91 (2), 209-221, 2008 | 31 | 2008 |
| Stochastic multiple context-free grammar for RNA pseudoknot modeling Y Kato, H Seki Information Science Technical Report, 2006 | 28 | 2006 |
| Rtips: fast and accurate tools for RNA 2D structure prediction using integer programming Y Kato, K Sato, K Asai, T Akutsu Nucleic acids research 40 (W1), W29-W34, 2012 | 25 | 2012 |
| Branch-and-bound algorithms for enumerating treelike chemical graphs with given path frequency using detachment-cut Y Ishida, Y Kato, L Zhao, H Nagamochi, T Akutsu Journal of chemical information and modeling 50 (5), 934-946, 2010 | 21 | 2010 |
| Age-dependent decline in remyelination capacity is mediated by apelin–APJ signaling M Ito, R Muramatsu, Y Kato, B Sharma, A Uyeda, S Tanabe, H Fujimura, ... Nature Aging 1 (3), 284-294, 2021 | 20 | 2021 |
| Rtools: a web server for various secondary structural analyses on single RNA sequences M Hamada, Y Ono, H Kiryu, K Sato, Y Kato, T Fukunaga, R Mori, K Asai Nucleic acids research 44 (W1), W302-W307, 2016 | 19 | 2016 |
| On the generative power of grammars for RNA secondary structure Y Kato, H Seki, T Kasami IEICE TRANSACTIONS on Information and Systems 88 (1), 53-64, 2005 | 19 | 2005 |
| ADAR1 regulates early T cell development via MDA5-dependent and-independent pathways T Vongpipatana, T Nakahama, T Shibuya, Y Kato, Y Kawahara The Journal of Immunology 204 (8), 2156-2168, 2020 | 14 | 2020 |
| Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences M Yano, Y Kato BMC genomics 15, 1-11, 2014 | 14 | 2014 |
