Daniel A. Cuevas
Daniel A. Cuevas
Graduate Student of Computational Biology, San Diego State University
Verified email at sdsu.edu - Homepage
TitleCited byYear
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
2352017
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
2352017
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
2352017
Accessing the SEED genome databases via Web services API: tools for programmers
T Disz, S Akhter, D Cuevas, R Olson, R Overbeek, V Vonstein, R Stevens, ...
BMC bioinformatics 11 (1), 319, 2010
1112010
Accessing the SEED genome databases via Web services API: tools for programmers
T Disz, S Akhter, D Cuevas, R Olson, R Overbeek, V Vonstein, R Stevens, ...
BMC bioinformatics 11 (1), 319, 2010
1112010
FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
GGZ Silva, DA Cuevas, BE Dutilh, RA Edwards
PeerJ 2, e425, 2014
662014
From DNA to FBA: how to build your own genome-scale metabolic model
DA Cuevas, J Edirisinghe, CS Henry, R Overbeek, TG O’Connell, ...
Frontiers in microbiology 7, 907, 2016
252016
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions
BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ...
BMC genomics 15 (1), 654, 2014
222014
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
YW Lim, DA Cuevas, GGZ Silva, K Aguinaldo, EA Dinsdale, AF Haas, ...
PeerJ 2, e520, 2014
192014
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
RA Edwards, AA Vega, HM Norman, M Ohaeri, K Levi, EA Dinsdale, ...
Nature microbiology 4 (10), 1727-1736, 2019
172019
Phage phenomics: physiological approaches to characterize novel viral proteins
SE Sanchez, DA Cuevas, JE Rostron, TY Liang, CG Pivaroff, MR Haynes, ...
JoVE (Journal of Visualized Experiments), e52854, 2015
152015
Prophage genomics reveals patterns in phage genome organization and replication
HS Kang, K McNair, D Cuevas, B Bailey, A Segall, RA Edwards
BioRxiv, 114819, 2017
92017
PMAnalyzer: a new web interface for bacterial growth curve analysis
DA Cuevas, RA Edwards
Bioinformatics 33 (12), 1905-1906, 2017
72017
Elucidating genomic gaps using phenotypic profiles
DA Cuevas, D Garza, SE Sanchez, J Rostron, CS Henry, V Vonstein, ...
F1000Research 3 (210), 210, 2016
72016
Cystic fibrosis rapid response: translating multi-omics data into clinically relevant information
AGC Güemes, YW Lim, RA Quinn, DJ Conrad, S Benler, H Maughan, ...
MBio 10 (2), e00431-19, 2019
52019
Critical assessment of metagenome interpretation–a benchmark of computational metagenomics software. bioRxiv
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Droege, ...
January, 2017
52017
Highlights of the second ISCB student council symposium in africa, 2017
CN Rafael, E Ashano, Y Moosa, S Shome, D DeBlasio
F1000Research 6, 2017
42017
Real-Time Metagenomics
DA Cuevas, JA Hoffman, RA Edwards
Acsess Proceedings. Available: http://www. csrc. sdsu. edu/acsess/reports …, 2011
22011
Growth Score: a single metric to define growth in 96-well phenotype assays
DA Cuevas, RA Edwards
PeerJ 6, e4681, 2018
12018
Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome
L Boling, DA Cuevas, JA Grasis, HS Kang, B Knowles, K Levi, H Maughan, ...
Gut Microbes, 1-14, 2020
2020
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Articles 1–20