Ruth Isserlin
Ruth Isserlin
Donnelly Centre, University of Toronto
Verified email at utoronto.ca
Title
Cited by
Cited by
Year
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366, 2007
20582007
A draft map of the human proteome
MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ...
Nature 509 (7502), 575-581, 2014
15582014
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation
D Merico, R Isserlin, O Stueker, A Emili, GD Bader
PloS one 5 (11), 2010
10652010
The biomolecular interaction network database and related tools 2005 update
C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, ...
Nucleic acids research 33 (suppl_1), D418-D424, 2005
6822005
Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma
H Witt, SC Mack, M Ryzhova, S Bender, M Sill, R Isserlin, A Benner, ...
Cancer cell 20 (2), 143-157, 2011
3512011
Too many roads not taken
AM Edwards, R Isserlin, GD Bader, SV Frye, TM Willson, HY Frank
Nature 470 (7333), 163-165, 2011
2972011
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
B Aranda, H Blankenburg, S Kerrien, FSL Brinkman, A Ceol, E Chautard, ...
Nature methods 8 (7), 528-529, 2011
2432011
A call for systematic research on solute carriers
A CÚsar-Razquin, B Snijder, T Frappier-Brinton, R Isserlin, G Gyimesi, ...
Cell 162 (3), 478-487, 2015
2412015
miR-126 regulates distinct self-renewal outcomes in normal and malignant hematopoietic stem cells
ER Lechman, B Gentner, SWK Ng, EM Schoof, P van Galen, JA Kennedy, ...
Cancer cell 29 (2), 214-228, 2016
1422016
Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses
AO Gramolini, T Kislinger, R Alikhani-Koopaei, V Fong, NJ Thompson, ...
Molecular & Cellular Proteomics 7 (3), 519-533, 2008
1162008
A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency
AB Mak, Z Ni, JA Hewel, GI Chen, G Zhong, K Karamboulas, K Blakely, ...
Molecular & Cellular Proteomics 9 (5), 811-823, 2010
1032010
The biomolecular interaction network database in PSI-MI 2.5
R Isserlin, RA El-Badrawi, GD Bader
Database 2011, 2011
902011
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap
J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ...
Nature protocols 14 (2), 482-517, 2019
802019
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
L Oesper, D Merico, R Isserlin, GD Bader
Source code for biology and medicine 6 (1), 7, 2011
682011
SeqHound: biological sequence and structure database as a platform for bioinformatics research
K Michalickova, GD Bader, M Dumontier, H Lieu, D Betel, R Isserlin, ...
BMC bioinformatics 3 (1), 32, 2002
672002
Enrichment Map–a Cytoscape app to visualize and explore OMICs pathway enrichment results
R Isserlin, D Merico, V Voisin, GD Bader
F1000Research 3, 2014
662014
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps
R Isserlin, D Merico, R Alikhani‐Koupaei, A Gramolini, GD Bader, A Emili
Proteomics 10 (6), 1316-1327, 2010
592010
Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map
D Merico, R Isserlin, GD Bader
Network Biology, 257-277, 2011
582011
Constitutively active calcineurin induces cardiac endoplasmic reticulum stress and protects against apoptosis that is mediated by α-crystallin-B
N Bousette, S Chugh, V Fong, R Isserlin, KH Kim, A Volchuk, PH Backx, ...
Proceedings of the National Academy of Sciences 107 (43), 18481-18486, 2010
562010
Large-scale characterization and analysis of the murine cardiac proteome
N Bousette, T Kislinger, V Fong, R Isserlin, JA Hewel, A Emili, ...
Journal of proteome research 8 (4), 1887-1901, 2009
502009
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