alka saxena
alka saxena
Genomics WA, Harry Perkins Institute for Medical Research and Telethon Kids Institute
Verified email at perkins.org.au
Title
Cited by
Cited by
Year
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
17012014
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
11272014
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16 (1), 1-14, 2015
4542015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F DrablÝs, ...
Science 347 (6225), 1010-1014, 2015
4122015
Site-specific DICER and DROSHA RNA products control the DNA-damage response
S Francia, F Michelini, A Saxena, D Tang, M De Hoon, V Anelli, M Mione, ...
Nature 488 (7410), 231-235, 2012
3992012
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ...
Nature genetics 46 (6), 558-566, 2014
2252014
Chromatin associated RNAi components control transcriptional regulation in Drosophila
OV Cernilogar F, Onoratti MC, O’ Kothe G, Burroughs A
Nature 480 (7377), 391-395, 2011
205*2011
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC genomics 15 (1), 1-12, 2014
1942014
Long non‐coding RNA modifies chromatin: epigenetic silencing by long non‐coding RNAs
A Saxena, P Carninci
Bioessays 33 (11), 830-839, 2011
1892011
A predictive computational framework for direct reprogramming between human cell types
OJL Rackham, J Firas, H Fang, ME Oates, ML Holmes, AS Knaupp, ...
Nature genetics 48 (3), 331, 2016
1752016
NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2
S Durand, A Patrizi, KB Quast, L Hachigian, R Pavlyuk, A Saxena, ...
Neuron 76 (6), 1078-1090, 2012
1402012
Centromere proteins Cenpa, Cenpb, and Bub3 interact with poly (ADP-ribose) polymerase-1 protein and are poly (ADP-ribosyl) ated
A Saxena, R Saffery, LH Wong, P Kalitsis, KHA Choo
Journal of Biological Chemistry 277 (30), 26921-26926, 2002
1392002
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
J Severin, M Lizio, J Harshbarger, H Kawaji, CO Daub, Y Hayashizaki, ...
Nature biotechnology 32 (3), 217-219, 2014
1352014
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, 2015
1252015
Redefinition of the human mast cell transcriptome by deep-CAGE sequencing
E Motakis, S Guhl, Y Ishizu, M Itoh, H Kawaji, M de Hoon, T Lassmann, ...
Blood, The Journal of the American Society of Hematology 123 (17), e58-e67, 2014
1132014
Association of microRNAs and YRNAs with platelet function
D Kaudewitz, P Skroblin, LH Bender, T Barwari, P Willeit, R Pechlaner, ...
Circulation research 118 (3), 420-432, 2016
1122016
Poly (ADP-ribose) polymerase 2 localizes to mammalian active centromeres and interacts with PARP-1, Cenpa, Cenpb and Bub3, but not Cenpc
A Saxena, LH Wong, P Kalitsis, E Earle, LG Shaffer, KHA Choo
Human molecular genetics 11 (19), 2319-2329, 2002
1042002
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
972014
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
H Kawaji, M Lizio, M Itoh, M Kanamori-Katayama, A Kaiho, ...
Genome research 24 (4), 708-717, 2014
812014
FANTOM5 CAGE profiles of human and mouse samples
S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ...
Scientific data 4 (1), 1-10, 2017
802017
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Articles 1–20