alka saxena
alka saxena
Genomics WA, Harry Perkins Institute for Medical Research and Telethon Kids Institute
Verified email at perkins.org.au
TitleCited byYear
An atlas of active enhancers across human cell types and tissues
R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ...
Nature 507 (7493), 455-461, 2014
14212014
A promoter-level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
1042*2014
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F DrablÝs, ...
Science 347 (6225), 1010-1014, 2015
3482015
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16 (1), 22, 2015
3442015
Site-specific DICER and DROSHA RNA products control the DNA-damage response
S Francia, F Michelini, A Saxena, D Tang, M De Hoon, V Anelli, M Mione, ...
Nature 488 (7410), 231-235, 2012
3362012
Chromatin associated RNAi components control transcriptional regulation in Drosophila
OV Cernilogar F, Onoratti MC, O’ Kothe G, Burroughs A
Nature 480 (7377), 391-395, 2011
191*2011
Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance
A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ...
Nature genetics 46 (6), 558, 2014
1842014
Effects of cytosine methylation on transcription factor binding sites
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...
BMC genomics 15 (1), 119, 2014
1672014
Long non‐coding RNA modifies chromatin: epigenetic silencing by long non‐coding RNAs
A Saxena, P Carninci
Bioessays 33 (11), 830-839, 2011
1602011
A predictive computational framework for direct reprogramming between human cell types
OJL Rackham, J Firas, H Fang, ME Oates, ML Holmes, AS Knaupp, ...
Nature genetics 48 (3), 331, 2016
1402016
Centromere proteins Cenpa, Cenpb, and Bub3 interact with poly (ADP-ribose) polymerase-1 protein and are poly (ADP-ribosyl) ated
A Saxena, R Saffery, LH Wong, P Kalitsis, KHA Choo
Journal of Biological Chemistry 277 (30), 26921-26926, 2002
1292002
NMDA receptor regulation prevents regression of visual cortical function in the absence of Mecp2
S Durand, A Patrizi, KB Quast, L Hachigian, R Pavlyuk, A Saxena, ...
Neuron 76 (6), 1078-1090, 2012
1152012
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
J Severin, M Lizio, J Harshbarger, H Kawaji, CO Daub, Y Hayashizaki, ...
Nature biotechnology 32 (3), 217-219, 2014
1132014
Poly (ADP-ribose) polymerase 2 localizes to mammalian active centromeres and interacts with PARP-1, Cenpa, Cenpb and Bub3, but not Cenpc
A Saxena, LH Wong, P Kalitsis, E Earle, LG Shaffer, KHA Choo
Human molecular genetics 11 (19), 2319-2329, 2002
1002002
Association of microRNAs and YRNAs with platelet function
D Kaudewitz, P Skroblin, LH Bender, T Barwari, P Willeit, R Pechlaner, ...
Circulation research 118 (3), 420-432, 2016
882016
EpiFactors: a comprehensive database of human epigenetic factors and complexes
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...
Database 2015, 2015
862015
Redefinition of the human mast cell transcriptome by deep-CAGE sequencing
E Motakis, S Guhl, Y Ishizu, M Itoh, H Kawaji, M de Hoon, T Lassmann, ...
Blood, The Journal of the American Society of Hematology 123 (17), e58-e67, 2014
842014
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
842014
Poly (ADP-ribose) polymerase at active centromeres and neocentromeres at metaphase
E Earle, A Saxena, A MacDonald, DF Hudson, LG Shaffer, R Saffery, ...
Human molecular genetics 9 (2), 187-194, 2000
722000
Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing
H Kawaji, M Lizio, M Itoh, M Kanamori-Katayama, A Kaiho, ...
Genome research 24 (4), 708-717, 2014
692014
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