Anne Siegel

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Valerie BertheIRIF, CNRSVerified email at irif.fr
Carito GuziołowskiAssociate professor of Computer Science, IRCCyN, École Centrale de NantesVerified email at irccyn.ec-nantes.fr
Sven ThieleMax Planck Institut for Dynamics of Complex Technical SystemsVerified email at mpi-magdeburg.mpg.de
Ovidiu RadulescuProfessor at University of MontpellierVerified email at umontpellier.fr
Jérémie BourdonFull Professor, Université de NantesVerified email at univ-nantes.fr
Clémence FriouxInria Bordeaux Sud-OuestVerified email at inria.fr
Damien EveillardNantes Université, Centrale Nantes, CNRS, LS2N, Université de NantesVerified email at univ-nantes.fr
Simon DittamiStation Biologique de RoscoffVerified email at sb-roscoff.fr
Torsten SchaubUniversity of PotsdamVerified email at cs.uni-potsdam.de
Olivier DameronUniversité de Rennes1Verified email at univ-rennes1.fr
Julio Saez RodriguezHeidelberg UniversityVerified email at bioquant.uni-heidelberg.de
Alejandro MaassCenter for Mathematical Modeling, University of ChileVerified email at dim.uchile.cl
catherine boyenDirectrice de recherche CNRS RoscoffVerified email at sb-roscoff.fr
Thierry TononCentre for Novel Agricultural Products, Department of Biology, University of YorkVerified email at york.ac.uk
Jörg ThuswaldnerUniversity of LeobenVerified email at unileoben.ac.at
sylvain prigentUMR 1332, Biologie des Fruits et Pathologies, INRAEVerified email at inrae.fr
Gabriel V. MarkovUMR 8227 Integrative Biology of Marine Models, Station Biologique de RoscoffVerified email at sb-roscoff.fr
Martin GebserUniversity of Klagenfurt / Graz University of TechnologyVerified email at aau.at
Loïc PaulevéCNRS/LaBRI, Bordeaux, FranceVerified email at ens-cachan.org
Sebastian N. MendozaPh.D. student, AIMMS, Vrije Universiteit AmsterdamVerified email at uc.cl

Anne Siegel

Research Director, CNRS, IRISA (Rennes, France)

Verified email at irisa.fr

Dynamical systems systems biology bioinformatics


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Substitutions in dynamics, arithmetics and combinatorics P Arnoux, V Berthé, S Ferenci, S Ito, C Mauduit, M Mori, J Peyriere, ... Lecture Notes in Mathematics 1794, 2002	964*	2002
Geometric representation of substitutions of Pisot type V Canterini, A Siegel Transactions of the American Mathematical Society 353 (12), 5121-5144, 2001	124	2001
Tilings associated with beta-numeration and substitutions V Berthé, A Siegel Integers: electronic journal of combinatorial number theory 5 (3), A2, 2005	123	2005
Repair and Prediction (under Inconsistency) in Large Biological Networks with Answer Set Programming. M Gebser, C Guziolowski, M Ivanchev, T Schaub, A Siegel, S Thiele, ... KR 10, 497-507, 2010	97	2010
Exhaustively characterizing feasible logic models of a signaling network using answer set programming C Guziolowski, S Videla, F Eduati, S Thiele, T Cokelaer, A Siegel, ... Bioinformatics 29 (18), 2320-2326, 2013	76	2013
Topological properties of Rauzy fractals A Siegel, JM Thuswaldner Mémoires de la SMF 118, 2009	75	2009
Automate des préfixes-suffixes associés à une substitution primitive V Canterini, A Siegel J. Th eor. Nombres Bordeaux 13 (2), 353-369, 2001	72	2001
On the Pisot substitution conjecture S Akiyama, M Barge, V Berthé, JY Lee, A Siegel Mathematics of aperiodic order, 33-72, 2015	61	2015
Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models M Aite, M Chevallier, C Frioux, C Trottier, J Got, MP Cortés, SN Mendoza, ... PLoS computational biology 14 (5), e1006146, 2018	59	2018
Meneco, a topology-based gap-filling tool applicable to degraded genome-wide metabolic networks S Prigent, C Frioux, SM Dittami, S Thiele, A Larhlimi, G Collet, F Gutknecht, ... PLoS computational biology 13 (1), e1005276, 2017	58	2017
A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs F Gondret, A Vincent, M Houée-Bigot, A Siegel, S Lagarrigue, D Causeur, ... BMC genomics 18 (1), 1-17, 2017	56	2017
Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks A Siegel, O Radulescu, M Le Borgne, P Veber, J Ouy, S Lagarrigue Biosystems 84 (2), 153-174, 2006	55	2006
Two-dimensional iterated morphisms and discrete planes P Arnoux, V Berthé, A Siegel Theoretical Computer Science 319 (1-3), 145-176, 2004	54	2004
Représentation des systemes dynamiques substitutifs non unimodulaires A Siegel Ergodic Theory and Dynamical Systems 23 (4), 1247-1273, 2003	52	2003
Purely periodic β-expansions in the Pisot non-unit case V Berthé, A Siegel Journal of Number Theory 127 (2), 153-172, 2007	48	2007
MiR-202 controls female fecundity by regulating medaka oogenesis S Gay, J Bugeon, A Bouchareb, L Henry, C Delahaye, F Legeai, ... PLoS genetics 14 (9), e1007593, 2018	47	2018
Boundary of central tiles associated with Pisot beta-numeration and purely periodic expansions S Akiyama, G Barat, V Berthé, A Siegel Monatshefte für Mathematik 155 (3), 377-419, 2008	43	2008
Pure discrete spectrum dynamical system and periodic tiling associated with a substitution A Siegel Annales de l'Institut Fourier 54 (2), 341-382, 2004	43	2004
Boolean network identification from perturbation time series data combining dynamics abstraction and logic programming M Ostrowski, L Paulevé, T Schaub, A Siegel, C Guziolowski Biosystems 149, 139-153, 2016	41	2016
Substitutions, Rauzy fractals, and tilings V Berthé, A Siegel, J Thuswaldner	39	2010

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