| Sequential bottlenecks drive viral evolution in early acute hepatitis C virus infection RA Bull, F Luciani, K McElroy, S Gaudieri, ST Pham, A Chopra, ... PLoS pathogens 7 (9), e1002243, 2011 | 303 | 2011 |
| GemSIM: general, error-model based simulator of next-generation sequencing data KE McElroy, F Luciani, T Thomas BMC genomics 13, 1-9, 2012 | 202 | 2012 |
| Contribution of intra-and interhost dynamics to norovirus evolution RA Bull, JS Eden, F Luciani, K McElroy, WD Rawlinson, PA White Journal of virology 86 (6), 3219-3229, 2012 | 148 | 2012 |
| Strain-specific parallel evolution drives short-term diversification during Pseudomonas aeruginosa biofilm formation KE McElroy, JGK Hui, JKK Woo, AWS Luk, JS Webb, S Kjelleberg, ... Proceedings of the National Academy of Sciences 111 (14), E1419-E1427, 2014 | 107 | 2014 |
| Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions K McElroy, T Thomas, F Luciani Microbial informatics and experimentation 4, 1-14, 2014 | 95 | 2014 |
| Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community P Gómez, S Paterson, L De Meester, X Liu, L Lenzi, MD Sharma, ... Nature communications 7 (1), 12453, 2016 | 79 | 2016 |
| Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias K McElroy, O Zagordi, R Bull, F Luciani, N Beerenwinkel BMC genomics 14, 1-12, 2013 | 68 | 2013 |
| Reconstruction of ribosomal RNA genes from metagenomic data L Fan, K McElroy, T Thomas PloS one 7 (6), e39948, 2012 | 65 | 2012 |
| Identification of a polymorphic collagen-like protein in the crustacean bacteria Pasteuria ramosa L Mouton, E Traunecker, K McElroy, L Du Pasquier, D Ebert Research in microbiology 160 (10), 792-799, 2009 | 34 | 2009 |
| Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa K McElroy, L Mouton, L Du Pasquier, W Qi, D Ebert Research in Microbiology 162 (7), 701-714, 2011 | 32 | 2011 |
| Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation F Li, RV Rane, V Luria, Z Xiong, J Chen, Z Li, RA Catullo, PC Griffin, ... Molecular Ecology Resources 22 (4), 1559-1581, 2022 | 29 | 2022 |
| Causes and Consequences of a Variant Strain of Phaeobacter inhibens With Reduced Competition ME Majzoub, K McElroy, M Maczka, T Thomas, S Egan Frontiers in Microbiology 9, 2601, 2018 | 17 | 2018 |
| Mitogenomic and nuclear diversity in the Mulga Parrot of the Australian arid zone: cryptic subspecies and tests for selection K McElroy, K Beattie, MRE Symonds, L Joseph Emu-Austral Ornithology 118 (1), 22-35, 2018 | 15 | 2018 |
| Robbery in progress: Historical museum collections bring to light a mitochondrial capture within a bird species widespread across southern Australia, the Copperback Quail … K McElroy, A Black, G Dolman, P Horton, L Pedler, CD Campbell, A Drew, ... Ecology and Evolution, 2020 | 10 | 2020 |
| Genome-Enabled Analysis of Population Dynamics and Virulence-Associated Loci in the Oat Crown Rust Fungus Puccinia coronata f. sp. avenae TC Hewitt, EC Henningsen, D Pereira, K McElroy, ES Nazareno, ... Molecular Plant-Microbe Interactions 37 (3), 290-303, 2024 | 9 | 2024 |
| Genomic evolution of the marine bacterium Phaeobacter inhibens during biofilm growth ME Majzoub, K McElroy, M Maczka, S Schulz, T Thomas, S Egan Applied and Environmental Microbiology 87 (19), e00769-21, 2021 | 7 | 2021 |
| Draft genome sequence of the chronic, nonclonal cystic fibrosis isolate Pseudomonas aeruginosa strain 18A JKK Woo, K McElroy, SA Rice, SM Kirov, T Thomas, S Kjelleberg Genome announcements 1 (2), 10.1128/genomea. 00001-13, 2013 | 3 | 2013 |
| Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification K McElroy, F Luciani, J Hui, S Rice, T Thomas BMC Bioinformatics 12, 1-2, 2011 | 1 | 2011 |
| Deciphering transcriptional programming during lupin (Lupinus angustifolius) seed development using RNA-seq V Wainaina, T Rathjen, T Hughes, A Marquardt, N Fletcher, H Casarotto, ... bioRxiv, 2024.09. 05.611346, 2024 | | 2024 |
| Lupin Omics: Transforming Lupin from Feed to Food for Biodiversity, Sustainability and Food Security L Gao, VW Mwape, A Tahmasian, K McElroy, H Lao, N Fletcher, ... PAG Australia 2023, 2023 | | 2023 |
