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Dirk-Jan M. van Workum
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PanTools v3: functional annotation, classification and phylogenomics
EM Jonkheer, DJM van Workum, S Sheikhizadeh Anari, B Brankovics, ...
Bioinformatics 38 (18), 4403-4405, 2022
242022
Genetic mechanisms underlying increased microalgal thermotolerance, maximal growth rate, and yield on light following adaptive laboratory evolution
R Barten, DJM Van Workum, E de Bakker, J Risse, M Kleisman, ...
BMC biology 20 (1), 242, 2022
112022
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding
W Xiong, DJM van Workum, L Berke, LV Bakker, E Schijlen, FFM Becker, ...
G3: Genes, Genomes, Genetics 13 (11), jkad204, 2023
42023
The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non‐host resistance to the downy mildew Bremia lactucae
W Xiong, L Berke, R Michelmore, DJM van Workum, FFM Becker, ...
The Plant Journal 115 (1), 108-126, 2023
42023
Panva: Pangenomic variant analysis
A van den Brandt, EM Jonkheer, DJM van Workum, H van de Wetering, ...
IEEE Transactions on Visualization and Computer Graphics, 2023
32023
Visual Exploration of Genetic Sequence Variants in Pangenomes.
A van den Brandt, EM Jonkheer, DJM van Workum, S Smit, A Vilanova
EuroVis (Posters), 27-29, 2022
22022
The Importance of PAVs and CNVs in the Lactuca Pangenome.
DJM van Workum, SL Mehrem, BL Snoek, MC Alderkamp, D Lapin, ...
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024
2024
Pantools: Pangenomics to Utilize the Wealth of High-Quality Genomes
DJM van Workum, EM Jonkheer, R van Esch, M Moed, T van Lankveld, ...
Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024
2024
Lactuca super-pangenome reduces bias towards reference genes in lettuce research
DJM van Workum, SL Mehrem, BL Snoek, MC Alderkamp, D Lapin, ...
bioRxiv, 2024.06. 20.599299, 2024
2024
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