| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 3465 | 2005 |
| Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006 | 1345 | 2006 |
| A promoter-level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014 | 933 | 2014 |
| The regulated retrotransposon transcriptome of mammalian cells GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ... Nature genetics 41 (5), 563, 2009 | 707 | 2009 |
| The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553, 2009 | 430 | 2009 |
| Unexpected expression of α-and β-globin in mesencephalic dopaminergic neurons and glial cells M Biagioli, M Pinto, D Cesselli, M Zaninello, D Lazarevic, P Roncaglia, ... Proceedings of the National Academy of Sciences 106 (36), 15454-15459, 2009 | 244 | 2009 |
| Multiple regulatory elements with spatially and temporally distinct activities control neurogenin1 expression in primary neurons of the zebrafish embryo P Blader, C Plessy, U Strähle Mechanisms of development 120 (2), 211-218, 2003 | 158 | 2003 |
| Two independent transcription initiation codes overlap on vertebrate core promoters V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ... Nature 507 (7492), 381-385, 2014 | 142 | 2014 |
| Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan C Plessy, N Bertin, H Takahashi, R Simone, M Salimullah, T Lassmann, ... Nature methods 7 (7), 528-534, 2010 | 142 | 2010 |
| High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression P Batut, A Dobin, C Plessy, P Carninci, TR Gingeras Genome research 23 (1), 169-180, 2013 | 137 | 2013 |
| The complexity of the mammalian transcriptome S Gustincich, A Sandelin, C Plessy, S Katayama, R Simone, D Lazarevic, ... The Journal of physiology 575 (2), 321-332, 2006 | 128 | 2006 |
| The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance SS Atanur, I Birol, V Guryev, M Hirst, O Hummel, C Morrissey, ... Genome research 20 (6), 791-803, 2010 | 103 | 2010 |
| Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes C Plessy, T Dickmeis, F Chalmel, U Strähle Trends in Genetics 21 (4), 207-210, 2005 | 80 | 2005 |
| Conserved and acquired features of neurogenin1 regulation P Blader, CS Lam, S Rastegar, R Scardigli, JC Nicod, N Simplicio, ... Development 131 (22), 5627-5637, 2004 | 75 | 2004 |
| Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary A Geling, C Plessy, S Rastegar, U Strähle, L Bally-Cuif Development 131 (9), 1993-2006, 2004 | 67 | 2004 |
| NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes M Salimullah, S Mizuho, C Plessy, P Carninci Cold Spring Harbor Protocols 2011 (1), pdb. prot5559, 2011 | 61 | 2011 |
| Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching DTP Tang, C Plessy, M Salimullah, AM Suzuki, R Calligaris, S Gustincich, ... Nucleic acids research 41 (3), e44-e44, 2013 | 51 | 2013 |
| Promoter architecture of mouse olfactory receptor genes C Plessy, G Pascarella, N Bertin, A Akalin, C Carrieri, A Vassalli, ... Genome research 22 (3), 486-497, 2012 | 51 | 2012 |
| Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo T Dickmeis, C Plessy, S Rastegar, P Aanstad, R Herwig, F Chalmel, ... Genome research 14 (2), 228-238, 2004 | 51 | 2004 |
| Community-driven computational biology with Debian Linux S Möller, HN Krabbenhöft, A Tille, D Paleino, A Williams, K Wolstencroft, ... BMC bioinformatics 11 (12), 1-6, 2010 | 47 | 2010 |
