Charles Plessy
Charles Plessy
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The transcriptional landscape of the mammalian genome
P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ...
science 309 (5740), 1559-1563, 2005
Genome-wide analysis of mammalian promoter architecture and evolution
P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ...
Nature genetics 38 (6), 626-635, 2006
A promoter-level mammalian expression atlas
ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ...
Nature 507 (7493), 462-470, 2014
The regulated retrotransposon transcriptome of mammalian cells
GJ Faulkner, Y Kimura, CO Daub, S Wani, C Plessy, KM Irvine, ...
Nature genetics 41 (5), 563, 2009
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ...
Nature genetics 41 (5), 553, 2009
Unexpected expression of α-and β-globin in mesencephalic dopaminergic neurons and glial cells
M Biagioli, M Pinto, D Cesselli, M Zaninello, D Lazarevic, P Roncaglia, ...
Proceedings of the National Academy of Sciences 106 (36), 15454-15459, 2009
Multiple regulatory elements with spatially and temporally distinct activities control neurogenin1 expression in primary neurons of the zebrafish embryo
P Blader, C Plessy, U Strähle
Mechanisms of development 120 (2), 211-218, 2003
Two independent transcription initiation codes overlap on vertebrate core promoters
V Haberle, N Li, Y Hadzhiev, C Plessy, C Previti, C Nepal, J Gehrig, ...
Nature 507 (7492), 381-385, 2014
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan
C Plessy, N Bertin, H Takahashi, R Simone, M Salimullah, T Lassmann, ...
Nature methods 7 (7), 528-534, 2010
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
P Batut, A Dobin, C Plessy, P Carninci, TR Gingeras
Genome research 23 (1), 169-180, 2013
The complexity of the mammalian transcriptome
S Gustincich, A Sandelin, C Plessy, S Katayama, R Simone, D Lazarevic, ...
The Journal of physiology 575 (2), 321-332, 2006
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
SS Atanur, I Birol, V Guryev, M Hirst, O Hummel, C Morrissey, ...
Genome research 20 (6), 791-803, 2010
Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes
C Plessy, T Dickmeis, F Chalmel, U Strähle
Trends in Genetics 21 (4), 207-210, 2005
Conserved and acquired features of neurogenin1 regulation
P Blader, CS Lam, S Rastegar, R Scardigli, JC Nicod, N Simplicio, ...
Development 131 (22), 5627-5637, 2004
Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary
A Geling, C Plessy, S Rastegar, U Strähle, L Bally-Cuif
Development 131 (9), 1993-2006, 2004
NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes
M Salimullah, S Mizuho, C Plessy, P Carninci
Cold Spring Harbor Protocols 2011 (1), pdb. prot5559, 2011
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching
DTP Tang, C Plessy, M Salimullah, AM Suzuki, R Calligaris, S Gustincich, ...
Nucleic acids research 41 (3), e44-e44, 2013
Promoter architecture of mouse olfactory receptor genes
C Plessy, G Pascarella, N Bertin, A Akalin, C Carrieri, A Vassalli, ...
Genome research 22 (3), 486-497, 2012
Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo
T Dickmeis, C Plessy, S Rastegar, P Aanstad, R Herwig, F Chalmel, ...
Genome research 14 (2), 228-238, 2004
Community-driven computational biology with Debian Linux
S Möller, HN Krabbenhöft, A Tille, D Paleino, A Williams, K Wolstencroft, ...
BMC bioinformatics 11 (12), 1-6, 2010
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