| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature Biotechnology, 1, 2019 | 14318 | 2019 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2206 | 2017 |
| American Gut: an Open Platform for Citizen Science Microbiome Research D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ... mSystems 3 (3), e00031-18, 2018 | 661 | 2018 |
| Host variables confound gut microbiota studies of human disease I Vujkovic-Cvijin, J Sklar, L Jiang, L Natarajan, R Knight, Y Belkaid Nature 587 (7834), 448-454, 2020 | 396 | 2020 |
| Phylogenetic placement of exact amplicon sequences improves associations with clinical information S Janssen, D McDonald, A Gonzalez, JA Navas-Molina, L Jiang, ZZ Xu, ... Msystems 3 (3), 10.1128/msystems. 00021-18, 2018 | 345 | 2018 |
| QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current Protocols in Bioinformatics 70 (1), e100, 2020 | 269 | 2020 |
| Vitamin D metabolites and the gut microbiome in older men RL Thomas, L Jiang, JS Adams, ZZ Xu, J Shen, S Janssen, G Ackermann, ... Nature communications 11 (1), 5997, 2020 | 104 | 2020 |
| Vitamin D metabolites and the gut microbiome in older men RL Thomas, L Jiang, JS Adams, ZZ Xu, J Shen, S Janssen, G Ackermann, ... Nature communications 11 (1), 5997, 2020 | 104 | 2020 |
| Intermittent hypoxia and hypercapnia, a hallmark of obstructive sleep apnea, alters the gut microbiome and metabolome A Tripathi, AV Melnik, J Xue, O Poulsen, MJ Meehan, G Humphrey, ... Msystems 3 (3), 10.1128/msystems. 00020-18, 2018 | 104 | 2018 |
| Consumption of fermented foods is associated with systematic differences in the gut microbiome and metabolome BC Taylor, F Lejzerowicz, M Poirel, JP Shaffer, L Jiang, A Aksenov, ... Msystems 5 (2), e00901-19, 2020 | 103 | 2020 |
| Human skin, oral, and gut microbiomes predict chronological age S Huang, N Haiminen, AP Carrieri, R Hu, L Jiang, L Parida, B Russell, ... Msystems 5 (1), e00630-19, 2020 | 91 | 2020 |
| Effects of the microalgae Chlamydomonas on gastrointestinal health FJ Fields, F Lejzerowicz, D Schroeder, SM Ngoi, M Tran, D McDonald, ... Journal of Functional Foods 65, 103738, 2020 | 81 | 2020 |
| Discrete false-discovery rate improves identification of differentially abundant microbes L Jiang, A Amir, JT Morton, R Heller, E Arias-Castro, R Knight MSystems 2 (6), 10.1128/msystems. 00092-17, 2017 | 77* | 2017 |
| Context-aware dimensionality reduction deconvolutes gut microbial community dynamics C Martino, L Shenhav, CA Marotz, G Armstrong, D McDonald, ... Nature biotechnology 39 (2), 165-168, 2021 | 73 | 2021 |
| Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations C Casals-Pascual, A González, Y Vázquez-Baeza, SJ Song, L Jiang, ... Gastroenterology 158 (6), 1524-1528, 2020 | 65 | 2020 |
| Untargeted Mass Spectrometry-Based Metabolomics Approach Unveils Molecular Changes in Raw and Processed Foods and Beverages JM Gauglitz, CM Aceves, AA Aksenov, G Aleti, J Almaliti, A Bouslimani, ... Food Chemistry, 125290, 2019 | 58 | 2019 |
| Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding SJ Song, J Wang, C Martino, L Jiang, WK Thompson, L Shenhav, ... Med 2 (8), 951-964. e5, 2021 | 54 | 2021 |
| High-resolution longitudinal dynamics of the cystic fibrosis sputum microbiome and metabolome through antibiotic therapy R Raghuvanshi, K Vasco, Y Vázquez-Baeza, L Jiang, JT Morton, D Li, ... Msystems 5 (3), 10.1128/msystems. 00292-20, 2020 | 48 | 2020 |
| SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment C Marotz, P Belda-Ferre, F Ali, P Das, S Huang, K Cantrell, L Jiang, ... Microbiome 9 (1), 1-15, 2021 | 38 | 2021 |
| Evaluating metagenomic prediction of the metaproteome in a 4.5-year study of a patient with Crohn's disease RH Mills, Y Vázquez-Baeza, Q Zhu, L Jiang, J Gaffney, G Humphrey, ... Msystems 4 (1), 10.1128/msystems. 00337-18, 2019 | 38 | 2019 |
Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
