Parameswaran Ramachandran
Parameswaran Ramachandran
Princess Margaret Cancer Centre, University Health Network
Verified email at uhnresearch.ca
Title
Cited by
Cited by
Year
Identification and location of hot spots in proteins using the short-time discrete Fourier transform
P Ramachandran, A Antoniou, PP Vaidyanathan
Conference Record of the Thirty-Eighth Asilomar Conference on Signals …, 2004
342004
Identification of hot-spot locations in proteins using digital filters
P Ramachandran, A Antoniou
IEEE journal of selected topics in signal processing 2 (3), 378-389, 2008
322008
MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data
P Ramachandran, GA Palidwor, CJ Porter, TJ Perkins
Bioinformatics 29 (4), 444-450, 2013
302013
Filter-based methodology for the location of hot spots in proteins and exons in DNA
P Ramachandran, WS Lu, A Antoniou
IEEE transactions on biomedical engineering 59 (6), 1598-1609, 2012
282012
E3 ubiquitin ligase Mule targets β-catenin under conditions of hyperactive Wnt signaling
C Dominguez-Brauer, R Khatun, AJ Elia, KL Thu, P Ramachandran, ...
Proceedings of the National Academy of Sciences 114 (7), E1148-E1157, 2017
252017
Identification of tubulin drug binding sites and prediction of relative differences in binding affinities to tubulin isotypes using digital signal processing
K Chen, JT Huzil, H Freedman, P Ramachandran, A Antoniou, ...
Journal of Molecular Graphics and Modelling 27 (4), 497-505, 2008
222008
Location of exons in DNA sequences using digital filters
P Ramachandran, WS Lu, A Antoniou
2009 IEEE International Symposium on Circuits and Systems, 2337-2340, 2009
192009
BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates
P Ramachandran, GA Palidwor, TJ Perkins
Epigenetics & chromatin 8 (1), 33, 2015
172015
Localization of hot spots in proteins using digital filters
P Ramachandran, A Antoniou
2006 IEEE International Symposium on Signal Processing and Information …, 2006
132006
AhR controls redox homeostasis and shapes the tumor microenvironment in BRCA1-associated breast cancer
SP Kubli, C Bassi, C Roux, A Wakeham, C Göbl, W Zhou, SM Jafari, ...
Proceedings of the National Academy of Sciences 116 (9), 3604-3613, 2019
122019
Improved hot-spot location technique for proteins using a bandpass notch digital filter
P Ramachandran, WS Lu, A Antoniou
2008 IEEE International Symposium on Circuits and Systems, 2673-2676, 2008
112008
Bayesian correlation analysis for sequence count data
D Sánchez-Taltavull, P Ramachandran, N Lau, TJ Perkins
PloS one 11 (10), e0163595, 2016
102016
Adaptive bandwidth kernel density estimation for next-generation sequencing data
P Ramachandran, TJ Perkins
BMC proceedings 7 (S7), S7, 2013
82013
Chromatin tandem affinity purification sequencing
VD Soleimani, GA Palidwor, P Ramachandran, TJ Perkins, MA Rudnicki
Nature protocols 8 (8), 1525-1534, 2013
82013
Optimized numerical mapping scheme for filter-based exon location in DNA using a quasi-Newton algorithm
P Ramachandran, WS Lu, A Antoniou
Proceedings of 2010 IEEE International Symposium on Circuits and Systems …, 2010
82010
Mutant ACVR1 arrests glial cell differentiation to drive tumorigenesis in pediatric gliomas
J Fortin, R Tian, I Zarrabi, G Hill, E Williams, G Sanchez-Duffhues, ...
Cancer cell, 2020
52020
Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks
P Ramachandran, D Sánchez-Taltavull, TJ Perkins
PloS one 12 (8), e0183103, 2017
42017
Identification and location of hot spots in proteins using digital filters
P Ramachandran, A Antoniou
IEEE Journal of selected topics in signal processing 2 (3), 2008
42008
Tuning technique for the location of hot spots in proteins using a bandpass notch digital filter
P Ramachandran, WS Lu, A Antoniou
2009 IEEE International Workshop on Genomic Signal Processing and Statistics …, 2009
32009
Cis-regulatory determinants of MyoD function
VD Soleimani, D Nguyen, P Ramachandran, GA Palidwor, CJ Porter, ...
Nucleic acids research 46 (14), 7221-7235, 2018
22018
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Articles 1–20