Wolfgang Gerlach

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Folker MeyerUniversity of Duisburg-Essen; University Hospital EssenVerified email at uni-due.de
Andreas WilkeArgonne National LaboratoryVerified email at anl.gov
Travis HarrisonArgonne National LaboratoryVerified email at anl.gov
Tobias PaczianSenior Programmer, Argonne National LaboratoryVerified email at mcs.anl.gov
Narayan DesaiGoogleVerified email at google.com
William L. TrimbleInstitute for Genomics and Systems Biology, Argonne National LaboratoryVerified email at anl.gov
Somali ChaterjiAssistant Professor, Purdue UniversityVerified email at purdue.edu
Saurabh BagchiProfessor, ECE and CS, Purdue UniversityVerified email at purdue.edu
Jens StoyeBielefeld University, Faculty of Technology and Center for Biotechnology (CeBiTec)Verified email at uni-bielefeld.de
Elizabeth M. GlassArgonne National LaboratoryVerified email at mcs.anl.gov
Jared WilkeningArgonne National LaboratoryVerified email at mcs.anl.gov
Mark D'SouzaUniversity of Chicago, Argonne National LaboratoryVerified email at uchicago.edu
Veli MäkinenProfessor of Computer Science, University of HelsinkiVerified email at helsinki.fi
Niko VälimäkiPostdoctoral researcher, University of HelsinkiVerified email at cs.helsinki.fi
kashyap dixitpennsylvania state university, iit kanpur, ibm researchVerified email at cse.psu.edu
Scott DevoidExperimental Computer Systems, Argonne National LaboratoryVerified email at anl.gov
Sebastian JünemannCenter for Biotechnology - Bielefeld UniversityVerified email at cebitec.uni-bielefeld.de
Alexander GoesmannProfessor für Bioinformatik und Systembiologie, Justus-Liebig-Universität GiessenVerified email at cebitec.uni-bielefeld.de
Sachandhan GaneshPurdue UniversityVerified email at purdue.edu
Paul C. WoodJohns Hopkins University Applied Physics LabVerified email at jhuapl.edu

Wolfgang Gerlach

Argonne National Laboratory

Verified email at mcs.anl.gov - Homepage

DevOp Bioinformatics Internet of Things


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KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018	396	2018
The MG-RAST metagenomics database and portal in 2015 A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ... Nucleic acids research 44 (D1), D590-D594, 2016	160	2016
Taxonomic Classification of Metagenomic Shotgun Sequences with CARMA3 W Gerlach, J Stoye Encyclopedia of Metagenomics: Genes, Genomes and Metagenomes: Basics …, 2015	147*	2015
Taxonomic classification of metagenomic shotgun sequences with CARMA3 W Gerlach, J Stoye Nucleic acids research 39 (14), e91-e91, 2011	147	2011
Skyport – Container-Based Execution Environment Management for Multi-Cloud Scientific Workflows W Gerlach, W Tang, KP Keegan, T Harrison, A Wilke, J Bischof, ... Proceedings of the 5th International Workshop on Data Intensive Computing in …, 2014	107	2014
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads W Gerlach, S Jünemann, F Tille, A Goesmann, J Stoye BMC bioinformatics 10 (1), 1-10, 2009	104	2009
A RESTful API for accessing microbial community data for MG-RAST A Wilke, J Bischof, T Harrison, T Brettin, MD Souza, W Gerlach, ... PLOS Computational Biology, 2015	66	2015
MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis F Meyer, S Bagchi, S Chaterji, W Gerlach, A Grama, T Harrison, T Paczian, ... Briefings in bioinformatics 20 (4), 1151-1159, 2019	60	2019
GUUGle: a utility for fast exact matching under RNA complementary rules including G–U base pairing W Gerlach, R Giegerich Bioinformatics 22 (6), 762-764, 2006	58	2006
The DOE Systems Biology Knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... bioRxiv, 096354, 2016	55	2016
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads A Mahgoub, P Wood, S Ganesh, S Mitra, W Gerlach, T Harrison, F Meyer, ... Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference, 28-40, 2017	41	2017
A Scalable Data Analysis Platform for Metagenomics W Tang, J Wilkening, N Desai, W Gerlach, A Wilke, F Meyer IEEE International Conference on Big Data, 2013	38	2013
Engineering a compressed suffix tree implementation N Välimäki, V Mäkinen, W Gerlach, K Dixit Journal of Experimental Algorithmics (JEA) 14, 4.2-4.23, 2010	37	2010
Compressed suffix tree—a basis for genome-scale sequence analysis N Välimäki, W Gerlach, K Dixit, V Mäkinen Bioinformatics 23 (5), 629-630, 2007	33	2007
Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma B Henrich, M Rumming, A Sczyrba, E Velleuer, R Dietrich, W Gerlach, ... PloS one 9 (3), e92297, 2014	25	2014
A metagenomics portal for a democratized sequencing world A Wilke, EM Glass, D Bartels, J Bischof, D Braithwaite, M D’Souza, ... Methods in enzymology 531, 487-523, 2013	22	2013
Container Orchestration for Scientific Workflows W Gerlach, W Tang, A Wilke, D Olson, F Meyer	19	2015
Engineering a compressed suffix tree implementation N Välimäki, W Gerlach, K Dixit, V Mäkinen 6th Workshop on Experimental Algorithms, 217-228, 2007	19	2007
Workload Characterization for MG-RAST Metagenomic Data Analytics Service in the Cloud W Tang, J Bischof, N Desai, K Mahadik, W Gerlach, T Harrison, A Wilke, ...	13	2014
Dynamic FM-Index for a collection of texts with application to space-efficient construction of the compressed suffix array W Gerlach Diploma thesis, Universität Bielefeld, Germany, 2007	12	2007

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