| limma powers differential expression analyses for RNA-sequencing and microarray studies ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth Nucleic acids research 43 (7), e47-e47, 2015 | 32636 | 2015 |
| Opportunities and challenges in long-read sequencing data analysis SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie, Q Gouil Genome biology 21 (1), 30, 2020 | 1513 | 2020 |
| A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007 | 1144 | 2007 |
| Apoptotic caspases suppress mtDNA-induced STING-mediated type I IFN production MJ White, K McArthur, D Metcalf, RM Lane, JC Cambier, MJ Herold, ... Cell 159 (7), 1549-1562, 2014 | 910 | 2014 |
| RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie F1000Research 5, ISCB Comm J-1408, 2018 | 818 | 2018 |
| beadarray: R classes and methods for Illumina bead-based data MJ Dunning, ML Smith, ME Ritchie, S Tavaré Bioinformatics 23 (16), 2183-2184, 2007 | 580 | 2007 |
| Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses R Liu, AZ Holik, S Su, N Jansz, K Chen, HS Leong, ME Blewitt, ... Nucleic acids research 43 (15), e97-e97, 2015 | 522 | 2015 |
| Empirical array quality weights in the analysis of microarray data ME Ritchie, D Diyagama, J Neilson, R van Laar, A Dobrovic, A Holloway, ... BMC bioinformatics 7, 1-16, 2006 | 331 | 2006 |
| Targeting BCL-2 with the BH3 mimetic ABT-199 in estrogen receptor-positive breast cancer F Vaillant, D Merino, L Lee, K Breslin, B Pal, ME Ritchie, GK Smyth, ... Cancer cell 24 (1), 120-129, 2013 | 317 | 2013 |
| Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments L Tian, X Dong, S Freytag, KA Lê Cao, S Su, A JalalAbadi, ... Nature methods 16 (6), 479-487, 2019 | 307 | 2019 |
| A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data NL Barbosa-Morais, MJ Dunning, SA Samarajiwa, JFJ Darot, ME Ritchie, ... Nucleic acids research 38 (3), e17-e17, 2010 | 289 | 2010 |
| Microarray background correction: maximum likelihood estimation for the normal–exponential convolution JD Silver, ME Ritchie, GK Smyth Biostatistics 10 (2), 352-363, 2009 | 240 | 2009 |
| Sensitization of BCL-2–expressing breast tumors to chemotherapy by the BH3 mimetic ABT-737 SR Oakes, F Vaillant, E Lim, L Lee, K Breslin, F Feleppa, S Deb, ... Proceedings of the National Academy of Sciences, 2011 | 233 | 2011 |
| Synergy between the KEAP1/NRF2 and PI3K pathways drives non-small-cell lung cancer with an altered immune microenvironment SA Best, DP De Souza, A Kersbergen, AN Policheni, S Dayalan, D Tull, ... Cell metabolism 27 (4), 935-943. e4, 2018 | 201 | 2018 |
| Combining multiple tools outperforms individual methods in gene set enrichment analyses M Alhamdoosh, M Ng, NJ Wilson, JM Sheridan, H Huynh, MJ Wilson, ... Bioinformatics 33 (3), 414-424, 2017 | 192 | 2017 |
| Multidisciplinary diabetes care with and without bariatric surgery in overweight people: a randomised controlled trial JM Wentworth, J Playfair, C Laurie, ME Ritchie, WA Brown, P Burton, ... The lancet Diabetes & endocrinology 2 (7), 545-552, 2014 | 187 | 2014 |
| Glimma: interactive graphics for gene expression analysis S Su, CW Law, C Ah-Cann, ML Asselin-Labat, ME Blewitt, ME Ritchie Bioinformatics 33 (13), 2050-2052, 2017 | 185 | 2017 |
| The neuropeptide VIP confers anticipatory mucosal immunity by regulating ILC3 activity C Seillet, K Luong, J Tellier, N Jacquelot, RD Shen, P Hickey, VC Wimmer, ... Nature immunology 21 (2), 168-177, 2020 | 178 | 2020 |
| Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells IJ Majewski, ME Ritchie, B Phipson, J Corbin, M Pakusch, A Ebert, ... Blood, The Journal of the American Society of Hematology 116 (5), 731-739, 2010 | 161 | 2010 |
| Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2 B Pal, T Bouras, W Shi, F Vaillant, JM Sheridan, N Fu, K Breslin, K Jiang, ... Cell reports 3 (2), 411-426, 2013 | 160 | 2013 |
Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchVerified email at wehi.edu.au
