Darrin M. York
Darrin M. York
Henry Rutgers University Professor, Rutgers University
Verified email at rutgers.edu - Homepage
Title
Cited by
Cited by
Year
Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems
T Darden, D York, L Pedersen
The Journal of chemical physics 98 (12), 10089-10092, 1993
211921993
CHARMM: the biomolecular simulation program
BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ...
Journal of computational chemistry 30 (10), 1545-1614, 2009
61052009
AMBER 2015
DA Case, J Berryman, RM Betz, DS Cerutti, TE Cheatham Iii, TA Darden, ...
University of California, 2015
20812015
The effect of long‐range electrostatic interactions in simulations of macromolecular crystals: A comparison of the Ewald and truncated list methods
DM York, TA Darden, LG Pedersen
The Journal of chemical physics 99 (10), 8345-8348, 1993
766*1993
A smooth solvation potential based on the conductor-like screening model
DM York, M Karplus
The Journal of Physical Chemistry A 103 (50), 11060-11079, 1999
3131999
An efficient linear-scaling Ewald method for long-range electrostatic interactions in combined QM/MM calculations
K Nam, J Gao, DM York
Journal of Chemical Theory and Computation 1 (1), 2-13, 2005
2512005
A chemical potential equalization method for molecular simulations
DM York, W Yang
The Journal of chemical physics 104 (1), 159-172, 1996
2421996
Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a …
Y Yang, H Yu, D York, Q Cui, M Elstner
The Journal of Physical Chemistry A 111 (42), 10861-10873, 2007
2232007
Linear‐scaling semiempirical quantum calculations for macromolecules
TS Lee, DM York, W Yang
The Journal of Chemical Physics 105 (7), 2744-2750, 1996
2101996
Toward the accurate modeling of DNA: the importance of long-range electrostatics
DM York, W Yang, H Lee, T Darden, LG Pedersen
Journal of the American Chemical Society 117 (17), 5001-5002, 1995
2051995
Atomic-level accuracy in simulations of large protein crystals
DM York, A Wlodawer, LG Pedersen, TA Darden
Proceedings of the National Academy of Sciences 91 (18), 8715-8718, 1994
2031994
Constant pH replica exchange molecular dynamics in explicit solvent using discrete protonation states: implementation, testing, and validation
JM Swails, DM York, AE Roitberg
Journal of chemical theory and computation 10 (3), 1341-1352, 2014
1732014
Specific reaction parametrization of the AM1/d Hamiltonian for phosphoryl transfer reactions: H, O, and P atoms
K Nam, Q Cui, J Gao, DM York
Journal of Chemical Theory and Computation 3 (2), 486-504, 2007
1542007
The fast Fourier Poisson method for calculating Ewald sums
D York, W Yang
The Journal of Chemical Physics 101 (4), 3298-3300, 1994
1341994
Theoretical methods that help understanding the structure and reactivity of gas phase ions
JM Mercero, JM Matxain, X Lopez, DM York, A Largo, LA Eriksson, ...
International Journal of Mass Spectrometry 240 (1), 37-99, 2005
1292005
Solvent structure and hammerhead ribozyme catalysis
M Martick, TS Lee, DM York, WG Scott
Chemistry & biology 15 (4), 332-342, 2008
1202008
Accurate proton affinity and gas-phase basicity values for molecules important in biocatalysis
A Moser, K Range, DM York
The Journal of Physical Chemistry B 114 (43), 13911-13921, 2010
1172010
AMBER 2015; University of California: San Francisco, CA, 2015
DA Case, JT Berryman, RM Betz, DS Cerutti, TE Cheatham III, TA Darden, ...
Google Scholar There is no corresponding record for this reference, 2015
1072015
Role of Mg2+ in Hammerhead Ribozyme Catalysis from Molecular Simulation
TS Lee, CS López, GM Giambaşu, M Martick, WG Scott, DM York
Journal of the American Chemical Society 130 (10), 3053-3064, 2008
1052008
Molecular dynamics simulation of HIV-1 protease in a crystalline environment and in solution
DM York, TA Darden, LG Pedersen, MW Anderson
Biochemistry 32 (6), 1443-1453, 1993
1051993
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