|Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling|
R Pidsley, E Zotenko, TJ Peters, MG Lawrence, GP Risbridger, P Molloy, ...
Genome biology 17 (1), 1-17, 2016
|Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA|
PM Warnecke, C Stirzaker, JR Melki, DS Millar, CL Paul, SJ Clark
Nucleic acids research 25 (21), 4422-4426, 1997
|Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band|
J Frigola, J Song, C Stirzaker, RA Hinshelwood, MA Peinado, SJ Clark
Nature genetics 38 (5), 540-549, 2006
|DNA methylation: bisulphite modification and analysis|
SJ Clark, A Statham, C Stirzaker, PL Molloy, M Frommer
Nature protocols 1 (5), 2353-2364, 2006
|Extensive DNA Methylation Spanning the Rb Promoter in Retinoblastoma Tumors|
C Stirzaker, DS Millar, CL Paul, PM Warnecke, J Harrison, PC Vincent, ...
Cancer research 57 (11), 2229-2237, 1997
|Identification and resolution of artifacts in bisulfite sequencing|
PM Warnecke, C Stirzaker, J Song, C Grunau, JR Melki, SJ Clark
Methods 27 (2), 101-107, 2002
|Methyl-CpG-binding domain proteins: readers of the epigenome|
Q Du, PL Luu, C Stirzaker, SJ Clark
Epigenomics 7 (6), 1051-1073, 2015
|Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells|
C Stirzaker, JZ Song, B Davidson, SJ Clark
Cancer research 64 (11), 3871-3877, 2004
|Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations|
PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ...
Genome research 26 (6), 719-731, 2016
|Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias|
SS Nair, MW Coolen, C Stirzaker, JZ Song, AL Statham, D Strbenac, ...
Epigenetics 6 (1), 34-44, 2011
|Regional activation of the cancer genome by long-range epigenetic remodeling|
SA Bert, MD Robinson, D Strbenac, AL Statham, JZ Song, T Hulf, ...
Cancer cell 23 (1), 9-22, 2013
|Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells|
JZ Song, C Stirzaker, J Harrison, JR Melki, SJ Clark
Oncogene 21 (7), 1048-1061, 2002
|Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity|
MW Coolen, C Stirzaker, JZ Song, AL Statham, Z Kassir, CS Moreno, ...
Nature cell biology 12 (3), 235-246, 2010
|Quantitative comparison of DNA methylation assays for biomarker development and clinical applications|
Nature biotechnology 34 (7), 726-737, 2016
|Acetylation of H2A. Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer|
F Valdés-Mora, JZ Song, AL Statham, D Strbenac, MD Robinson, SS Nair, ...
Genome research 22 (2), 307-321, 2012
|Mining cancer methylomes: prospects and challenges|
C Stirzaker, PC Taberlay, AL Statham, SJ Clark
Trends in Genetics 30 (2), 75-84, 2014
|Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA|
AL Statham, MD Robinson, JZ Song, MW Coolen, C Stirzaker, SJ Clark
Genome research 22 (6), 1120-1127, 2012
|Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value|
C Stirzaker, E Zotenko, JZ Song, W Qu, SS Nair, WJ Locke, A Stone, ...
Nature communications 6 (1), 1-11, 2015
|Repitools: an R package for the analysis of enrichment-based epigenomic data|
AL Statham, D Strbenac, MW Coolen, C Stirzaker, SJ Clark, MD Robinson
Bioinformatics 26 (13), 1662-1663, 2010
|Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation|
MD Robinson, C Stirzaker, AL Statham, MW Coolen, JZ Song, SS Nair, ...
Genome research 20 (12), 1719-1729, 2010