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Clare Stirzaker
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Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
R Pidsley, E Zotenko, TJ Peters, MG Lawrence, GP Risbridger, P Molloy, ...
Genome biology 17 (1), 1-17, 2016
7162016
Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA
PM Warnecke, C Stirzaker, JR Melki, DS Millar, CL Paul, SJ Clark
Nucleic acids research 25 (21), 4422-4426, 1997
4371997
Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band
J Frigola, J Song, C Stirzaker, RA Hinshelwood, MA Peinado, SJ Clark
Nature genetics 38 (5), 540-549, 2006
4362006
DNA methylation: bisulphite modification and analysis
SJ Clark, A Statham, C Stirzaker, PL Molloy, M Frommer
Nature protocols 1 (5), 2353-2364, 2006
3862006
Extensive DNA Methylation Spanning the Rb Promoter in Retinoblastoma Tumors
C Stirzaker, DS Millar, CL Paul, PM Warnecke, J Harrison, PC Vincent, ...
Cancer research 57 (11), 2229-2237, 1997
3761997
Identification and resolution of artifacts in bisulfite sequencing
PM Warnecke, C Stirzaker, J Song, C Grunau, JR Melki, SJ Clark
Methods 27 (2), 101-107, 2002
3652002
Methyl-CpG-binding domain proteins: readers of the epigenome
Q Du, PL Luu, C Stirzaker, SJ Clark
Epigenomics 7 (6), 1051-1073, 2015
3362015
Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells
C Stirzaker, JZ Song, B Davidson, SJ Clark
Cancer research 64 (11), 3871-3877, 2004
2692004
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ...
Genome research 26 (6), 719-731, 2016
2612016
Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias
SS Nair, MW Coolen, C Stirzaker, JZ Song, AL Statham, D Strbenac, ...
Epigenetics 6 (1), 34-44, 2011
2102011
Regional activation of the cancer genome by long-range epigenetic remodeling
SA Bert, MD Robinson, D Strbenac, AL Statham, JZ Song, T Hulf, ...
Cancer cell 23 (1), 9-22, 2013
2092013
Hypermethylation trigger of the glutathione-S-transferase gene (GSTP1) in prostate cancer cells
JZ Song, C Stirzaker, J Harrison, JR Melki, SJ Clark
Oncogene 21 (7), 1048-1061, 2002
2042002
Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity
MW Coolen, C Stirzaker, JZ Song, AL Statham, Z Kassir, CS Moreno, ...
Nature cell biology 12 (3), 235-246, 2010
1992010
Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Nature biotechnology 34 (7), 726-737, 2016
1912016
Acetylation of H2A. Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer
F Valdés-Mora, JZ Song, AL Statham, D Strbenac, MD Robinson, SS Nair, ...
Genome research 22 (2), 307-321, 2012
1912012
Mining cancer methylomes: prospects and challenges
C Stirzaker, PC Taberlay, AL Statham, SJ Clark
Trends in Genetics 30 (2), 75-84, 2014
1842014
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
AL Statham, MD Robinson, JZ Song, MW Coolen, C Stirzaker, SJ Clark
Genome research 22 (6), 1120-1127, 2012
1782012
Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value
C Stirzaker, E Zotenko, JZ Song, W Qu, SS Nair, WJ Locke, A Stone, ...
Nature communications 6 (1), 1-11, 2015
1712015
Repitools: an R package for the analysis of enrichment-based epigenomic data
AL Statham, D Strbenac, MW Coolen, C Stirzaker, SJ Clark, MD Robinson
Bioinformatics 26 (13), 1662-1663, 2010
1692010
Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation
MD Robinson, C Stirzaker, AL Statham, MW Coolen, JZ Song, SS Nair, ...
Genome research 20 (12), 1719-1729, 2010
1332010
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