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Charity W Law
Charity W Law
Verified email at wehi.edu.au
Title
Cited by
Cited by
Year
limma powers differential expression analyses for RNA-sequencing and microarray studies
ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth
Nucleic acids research 43 (7), e47-e47, 2015
279712015
voom: Precision weights unlock linear model analysis tools for RNA-seq read counts
CW Law, Y Chen, W Shi, GK Smyth
Genome biology 15, 1-17, 2014
54472014
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie
F1000Research 5, 2016
7122016
Glimma: interactive graphics for gene expression analysis
S Su, CW Law, C Ah-Cann, ML Asselin-Labat, ME Blewitt, ME Ritchie
Bioinformatics 33 (13), 2050-2052, 2017
1572017
Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage
C Soneson, KL Matthes, M Nowicka, CW Law, MD Robinson
Genome biology 17, 1-15, 2016
1382016
Statistical methods for detecting differentially methylated loci and regions
MD Robinson, A Kahraman, CW Law, H Lindsay, M Nowicka, LM Weber, ...
Frontiers in genetics 5, 324, 2014
1342014
Identification of quiescent and spatially restricted mammary stem cells that are hormone responsive
NY Fu, AC Rios, B Pal, CW Law, P Jamieson, R Liu, F Vaillant, F Jackling, ...
Nature cell biology 19 (3), 164-176, 2017
1152017
Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria
AH Achtman, S Pilat, CW Law, DJ Lynn, L Janot, ML Mayer, S Ma, ...
Science Translational Medicine 4 (135), 135ra64-135ra64, 2012
1092012
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing
L Tian, JS Jabbari, R Thijssen, Q Gouil, SL Amarasinghe, O Voogd, ...
Genome biology 22, 1-24, 2021
1072021
Toward a gold standard for benchmarking gene set enrichment analysis
L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ...
Briefings in bioinformatics 22 (1), 545-556, 2021
1022021
The hematopoietic oncoprotein FOXP1 promotes tumor cell survival in diffuse large B-cell lymphoma by repressing S1PR2 signaling
M Flori, CA Schmid, ET Sumrall, A Tzankov, CW Law, MD Robinson, ...
Blood, The Journal of the American Society of Hematology 127 (11), 1438-1448, 2016
672016
GK Smyth limma powers differential expression analyses for RNA-sequencing and microarray studies., 2015, 43, p. e47
ME Ritchie, B Phipson, D Wu, Y Hu, CW Law, W Shi
DOI: https://doi. org/10.1093/nar/gkv007, 0
66
Easy and efficient ensemble gene set testing with EGSEA
M Alhamdoosh, CW Law, L Tian, JM Sheridan, M Ng, ME Ritchie
F1000Research 6, 2017
612017
A guide to creating design matrices for gene expression experiments
CW Law, K Zeglinski, X Dong, M Alhamdoosh, GK Smyth, ME Ritchie
F1000Research 9, 2020
382020
Covering all your bases: incorporating intron signal from RNA-seq data
S Lee, AY Zhang, S Su, AP Ng, AZ Holik, ML Asselin-Labat, ME Ritchie, ...
NAR Genomics and Bioinformatics 2 (3), lqaa073, 2020
35*2020
The long and the short of it: unlocking nanopore long-read RNA sequencing data with short-read differential expression analysis tools
X Dong, L Tian, Q Gouil, H Kariyawasam, S Su, R De Paoli-Iseppi, ...
NAR genomics and bioinformatics 3 (2), lqab028, 2021
342021
RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods
AZ Holik, CW Law, R Liu, Z Wang, W Wang, J Ahn, ML Asselin-Labat, ...
Nucleic acids research 45 (5), e30-e30, 2017
322017
DNMT3L is a regulator of X chromosome compaction and post-meiotic gene transcription
NM Zamudio, HS Scott, K Wolski, CY Lo, C Law, D Leong, SA Kinkel, ...
PloS one 6 (3), e18276, 2011
272011
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures
X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ...
Nature Methods 20 (11), 1810-1821, 2023
222023
The impact of influenza pulmonary infection and inflammation on vagal bronchopulmonary sensory neurons
NAJ Verzele, BY Chua, CW Law, A Zhang, ME Ritchie, O Wightman, ...
The FASEB Journal 35 (3), e21320, 2021
172021
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