Nandan Deshpande
Nandan Deshpande
Doctor of Philosophy, UNSW, Sydney, Australia
Verified email at unsw.edu.au
Title
Cited by
Cited by
Year
ONCOMINE: a cancer microarray database and integrated data-mining platform
DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, ...
Neoplasia 6 (1), 1-6, 2004
29222004
Development of human protein reference database as an initial platform for approaching systems biology in humans
S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ...
Genome research 13 (10), 2363-2371, 2003
12222003
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, ...
Proceedings of the National Academy of Sciences 101 (25), 9309-9314, 2004
10882004
Human protein reference database—2006 update
GR Mishra, M Suresh, K Kumaran, N Kannabiran, S Suresh, P Bala, ...
Nucleic acids research 34 (suppl_1), D411-D414, 2006
6972006
Human protein reference database as a discovery resource for proteomics
S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ...
Nucleic acids research 32 (suppl_1), D497-D501, 2004
6292004
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
TKB Gandhi, J Zhong, S Mathivanan, L Karthick, KN Chandrika, ...
Nature genetics 38 (3), 285-293, 2006
5322006
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
CP Kubicek, A Herrera-Estrella, V Seidl-Seiboth, DA Martinez, ...
Genome biology 12 (4), 1-15, 2011
5282011
Protein glycosylation pathways in filamentous fungi
N Deshpande, MR Wilkins, N Packer, H Nevalainen
Glycobiology 18 (8), 626-637, 2008
1782008
Plasma Proteome Database as a resource for proteomics research
B Muthusamy, G Hanumanthu, S Suresh, B Rekha, D Srinivas, L Karthick, ...
Proteomics 5 (13), 3531-3536, 2005
1502005
Specific bacteria and metabolites associated with response to fecal microbiota transplantation in patients with ulcerative colitis
S Paramsothy, S Nielsen, MA Kamm, NP Deshpande, JJ Faith, ...
Gastroenterology 156 (5), 1440-1454. e2, 2019
1332019
Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E
SA Waters, SP McAteer, G Kudla, I Pang, NP Deshpande, TG Amos, ...
The EMBO journal 36 (3), 374-387, 2017
1102017
GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA
N Deshpande, PH Jensen, NH Packer, D Kolarich
Journal of proteome research 9 (2), 1063-1075, 2010
1032010
A proteomic analysis of salivary glands of female Anopheles gambiae mosquito
DE Kalume, M Okulate, J Zhong, R Reddy, S Suresh, N Deshpande, ...
Proteomics 5 (14), 3765-3777, 2005
822005
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform
SH Nagaraj, N Deshpande, RB Gasser, S Ranganathan
Nucleic Acids Research 35 (suppl_2), W143-W147, 2007
802007
The pathogenic potential of Campylobacter concisus strains associated with chronic intestinal diseases
NO Kaakoush, NP Deshpande, MR Wilkins, CG Tan, JA Burgos-Portugal, ...
PloS one 6 (12), e29045, 2011
722011
Integrative genomics identifies the molecular basis of resistance to azacitidine therapy in myelodysplastic syndromes
A Unnikrishnan, E Papaemmanuil, D Beck, NP Deshpande, A Verma, ...
Cell reports 20 (3), 572-585, 2017
712017
Signatures within the esophageal microbiome are associated with host genetics, age, and disease
NP Deshpande, SM Riordan, N Castaño-Rodríguez, MR Wilkins, ...
Microbiome 6 (1), 1-14, 2018
502018
Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association
NP Deshpande, NO Kaakoush, MR Wilkins, HM Mitchell
BMC genomics 14 (1), 1-14, 2013
432013
Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus
NO Kaakoush, NP Deshpande, SM Man, JA Burgos-Portugal, FA Khattak, ...
Infection and immunity 83 (2), 832-845, 2015
412015
Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: validation of genes and alternative mRNA splicing
CNI Pang, AP Tay, C Aya, NA Twine, L Harkness, G Hart-Smith, SZ Chia, ...
Journal of proteome research 13 (1), 84-98, 2014
412014
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