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Shalima S Nair
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Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias
SS Nair, MW Coolen, C Stirzaker, JZ Song, AL Statham, D Strbenac, ...
Epigenetics 6 (1), 34-44, 2011
2442011
Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Nature biotechnology 34 (7), 726-737, 2016
2362016
Acetylation of H2A. Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer
F Valdés-Mora, JZ Song, AL Statham, D Strbenac, MD Robinson, SS Nair, ...
Genome research 22 (2), 307-321, 2012
2242012
Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value
C Stirzaker, E Zotenko, JZ Song, W Qu, SS Nair, WJ Locke, A Stone, ...
Nature communications 6 (1), 5899, 2015
2132015
MicroRNA alterations and associated aberrant DNA methylation patterns across multiple sample types in oral squamous cell carcinoma
ED Wiklund, S Gao, T Hulf, T Sibbritt, S Nair, DE Costea, SB Villadsen, ...
PLoS one 6 (11), e27840, 2011
1922011
Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation
MD Robinson, C Stirzaker, AL Statham, MW Coolen, JZ Song, SS Nair, ...
Genome research 20 (12), 1719-1729, 2010
1422010
Epigenetic reprogramming at estrogen-receptor binding sites alters 3D chromatin landscape in endocrine-resistant breast cancer
J Achinger-Kawecka, F Valdes-Mora, PL Luu, KA Giles, CE Caldon, W Qu, ...
Nature communications 11 (1), 320, 2020
1182020
Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming
AS Knaupp, S Buckberry, J Pflueger, SM Lim, E Ford, MR Larcombe, ...
Cell stem cell 21 (6), 834-845. e6, 2017
1132017
Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer
Q Du, SA Bert, NJ Armstrong, CE Caldon, JZ Song, SS Nair, CM Gould, ...
Nature communications 10 (1), 416, 2019
1082019
Epigenetic-induced repression of microRNA-205 is associated with MED1 activation and a poorer prognosis in localized prostate cancer
T Hulf, T Sibbritt, ED Wiklund, K Patterson, JZ Song, C Stirzaker, W Qu, ...
Oncogene 32 (23), 2891-2899, 2013
1072013
Mapping the regulatory sequences controlling 93 breast cancer-associated miRNA genes leads to the identification of two functional promoters of the Hsa-mir-200b cluster …
EJH Wee, K Peters, SS Nair, T Hulf, S Stein, S Wagner, P Bailey, SY Lee, ...
Oncogene 31 (38), 4182-4195, 2012
992012
Enduring epigenetic landmarks define the cancer microenvironment
R Pidsley, MG Lawrence, E Zotenko, B Niranjan, A Statham, J Song, ...
Genome research 28 (5), 625-638, 2018
932018
Comprehensive evaluation of genome-wide 5-hydroxymethylcytosine profiling approaches in human DNA
K Skvortsova, E Zotenko, PL Luu, CM Gould, SS Nair, SJ Clark, ...
Epigenetics & chromatin 10, 1-20, 2017
842017
Methylation-capture and next-generation sequencing of free circulating DNA from human plasma
K Warton, V Lin, T Navin, NJ Armstrong, W Kaplan, K Ying, B Gloss, ...
BMC genomics 15, 1-13, 2014
842014
Acetylated histone variant H2A. Z is involved in the activation of neo-enhancers in prostate cancer
F Valdés-Mora, CM Gould, Y Colino-Sanguino, W Qu, JZ Song, KM Taylor, ...
Nature Communications 8 (1), 1346, 2017
822017
Androgen receptor expression predicts breast cancer survival: the role of genetic and epigenetic events
KM Peters, SL Edwards, SS Nair, JD French, PJ Bailey, K Salkield, ...
BMC cancer 12, 1-10, 2012
782012
DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation patterns
K Skvortsova, E Masle-Farquhar, PL Luu, JZ Song, W Qu, E Zotenko, ...
Cancer cell 35 (2), 297-314. e8, 2019
732019
Genetic Dissection of itpr Gene Function Reveals a Vital Requirement in Aminergic Cells of Drosophila Larvae
R Joshi, K Venkatesh, R Srinivas, S Nair, G Hasan
Genetics 166 (1), 225-236, 2004
622004
Macrophage development and activation involve coordinated intron retention in key inflammatory regulators
ID Green, N Pinello, R Song, Q Lee, JM Halstead, CT Kwok, ACH Wong, ...
Nucleic Acids Research 48 (12), 6513-6529, 2020
512020
Functional properties of the Drosophila melanogaster inositol 1, 4, 5-trisphosphate receptor mutants
S Srikanth, Z Wang, H Tu, S Nair, MK Mathew, G Hasan, I Bezprozvanny
Biophysical journal 86 (6), 3634-3646, 2004
502004
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Articles 1–20