Follow
Naim Matasci
Naim Matasci
Director, Applied AI, Ellison Institute of Technology
Verified email at eit.org - Homepage
Title
Cited by
Cited by
Year
Phylotranscriptomic analysis of the origin and early diversification of land plants
NJ Wickett, S Mirarab, N Nguyen, T Warnow, E Carpenter, N Matasci, ...
Proceedings of the National Academy of Sciences 111 (45), E4859-E4868, 2014
12012014
One thousand plant transcriptomes and the phylogenomics of green plants
Nature 574 (7780), 679-685, 2019
11812019
Data access for the 1,000 Plants (1KP) project
N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ...
Gigascience 3 (1), 2047-217X-3-17, 2014
5822014
The iPlant collaborative: cyberinfrastructure for plant biology
SA Goff, M Vaughn, S McKay, E Lyons, AE Stapleton, D Gessler, ...
Frontiers in plant science 2, 34, 2011
5372011
The taxonomic name resolution service: an online tool for automated standardization of plant names
B Boyle, N Hopkins, Z Lu, JA Raygoza Garay, D Mozzherin, T Rees, ...
BMC bioinformatics 14, 1-15, 2013
5362013
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP)
EJ Carpenter, N Matasci, S Ayyampalayam, S Wu, J Sun, J Yu, ...
GigaScience 8 (10), giz126, 2019
1212019
Vitis phylogenomics: hybridization intensities from a SNP array outperform genotype calls
AJ Miller, N Matasci, H Schwaninger, MK Aradhya, B Prins, GY Zhong, ...
PloS one 8 (11), e78680, 2013
552013
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient
A Stoltzfus, H Lapp, N Matasci, H Deus, B Sidlauskas, CM Zmasek, ...
BMC bioinformatics 14, 1-17, 2013
472013
Data access for the 1,000 Plants (1KP) project. GigaScience 3: 17
N Matasci, LH Hung, Z Yan, EJ Carpenter, NJ Wickett, S Mirarab, ...
Article PubMed PubMed Central, 2014
392014
Predicting antibody developability from sequence using machine learning
X Chen, T Dougherty, C Hong, R Schibler, YC Zhao, R Sadeghi, ...
biorxiv, 2020.06. 18.159798, 2020
212020
Monitoring dynamic cytotoxic chemotherapy response in castration-resistant prostate cancer using plasma cell-free DNA (cfDNA)
K Patsch, N Matasci, A Soundararajan, P Diaz, DB Agus, D Ruderman, ...
BMC Research Notes 12, 1-7, 2019
202019
Imaging-based machine learning analysis of patient-derived tumor organoid drug response
ER Spiller, N Ung, S Kim, K Patsch, R Lau, C Strelez, C Doshi, S Choung, ...
Frontiers in oncology 11, 771173, 2021
132021
Metadata Mapper: a web service for mapping data between independent visual analysis components, guided by perceptual rules
BE Rogowitz, N Matasci
Human vision and electronic imaging XVI 7865, 165-177, 2011
102011
Phylogenetic analysis with the iPlant discovery environment
N Matasci, S McKay
Current protocols in bioinformatics 42 (1), 6.13. 1-6.13. 13, 2013
82013
Adaptation of imaging mass cytometry to explore the single cell alloimmune landscape of liver transplant rejection
N Ung, C Goldbeck, C Man, J Hoeflich, R Sun, A Barbetta, N Matasci, ...
Frontiers in Immunology 13, 831103, 2022
72022
Data mining with iPlant: A meeting report from the 2013 GARNet workshop, Data mining with iPlant
L Martin, C Cook, N Matasci, J Williams, R Bastow
Journal of experimental botany 66 (1), 1-6, 2015
32015
Immune biomarkers associated with COVID-19 disease severity in an urban, hospitalized population
AB Chambliss, M Aljehani, B Tran, X Chen, E Elton, C Garri, N Ung, ...
Practical Laboratory Medicine 36, e00323, 2023
12023
Sequencing protocols for the one thousand plant transcriptomes initiative
EJ Carpenter, N Matasci, S Wu, J Sun, J Yu, FRJ Vieira, C Bowler, ...
12019
Causal personalized treatment estimation framework using real-world electronic health record (EHR) data to inform cancer care decisions
S Srivatsa, D Walsh, M Aljehani, J Weinreb, N Becker, BH Ellis, R George, ...
Cancer Research 84 (6_Supplement), 6467-6467, 2024
2024
A novel thin plate spline methodology to model tissue surfaces and quantify tumor cell invasion in organ-on-chip models
E Elton, C Strelez, N Ung, R Perez, K Ghaffarian, N Matasci, ...
bioRxiv, 2023
2023
The system can't perform the operation now. Try again later.
Articles 1–20