Sebastian Duchene - Google Scholar Citations

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	All	Since 2014
Citations	1449	1401
h-index	21	21
i10-index	36	35

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201220132014201520162017201820199 32 40 131 208 321 522 167

Co-authors

Simon HoProfessor of Molecular Evolution, University of SydneyVerified email at sydney.edu.au
Edward C HolmesUniversity of SydneyVerified email at sydney.edu.au
David A. DuchêneDECRA fellow, Australian National UniversityVerified email at anu.edu.au
Jemma L GeogheganMacquarie UniversityVerified email at mq.edu.au
Kathryn HoltMonash University & LSHTMVerified email at lshtm.ac.uk
Phillip A. MorinResearch Molecular Geneticist, Southwest Fisheries Science CenterVerified email at noaa.gov
M Thomas P GilbertUniversity of CopenhagenVerified email at snm.ku.dk
Robert LanfearAustralian National UniversityVerified email at anu.edu.au
John-Sebastian EdenResearch Scientist at the Westmead Institute for Medical Research, AustraliaVerified email at sydney.edu.au
François-Xavier WeillResearch Director, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
Martyna MolakResearcher, Museum and Institute of Zoology, Polish Academy of Sciences, Warsaw, PolandVerified email at miiz.waw.pl
Jane HawkeyMonash University, Department of Infectious DiseasesVerified email at monash.edu
Francesca Di GiallonardoPostdoctoral Research Fellow, University of New South WalesVerified email at kirby.unsw.edu.au
Nathan LoProfessor, School of Life and Environmental Sciences, The University of SydneyVerified email at sydney.edu.au
David EdwardsDepartment of Biochemistry and Molecular Biology, Bio21 Institute, University of MelbourneVerified email at monash.edu
Kelly L. WyresMonash UniversityVerified email at monash.edu
Margaret LamDepartment of Infectious Diseases, Central Clinical School, Monash UniversityVerified email at monash.edu
Beth ShapiroUC Santa Cruz Genomics Institute; Ecology and Evolutionary Biology, UC Santa CruzVerified email at ucsc.edu
Zoe A DysonUniversity of Cambridge & University of MelbourneVerified email at cam.ac.uk
Andrew M. RitchieBiology Department, Temple UniversityVerified email at sydney.edu.au

Sebastian Duchene

Australian Research Council DECRA fellow, University of Melbourne

Verified email at unimelb.edu.au - Homepage

phylogenetics virus evolution Bayesian statistics phylodynamics


Title	Cited by	Year
Molecular‐clock methods for estimating evolutionary rates and timescales SYW Ho, S Duchêne Molecular ecology 23 (24), 5947-5965, 2014	149	2014
Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus LS Weyrich, S Duchene, J Soubrier, L Arriola, B Llamas, J Breen, ... Nature 544 (7650), 357, 2017	117	2017
Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation S Duchêne, FI Archer, J Vilstrup, S Caballero, PA Morin PloS one 6 (11), e27138, 2011	93	2011
Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates S Duchêne, EC Holmes, SYW Ho Proceedings of the Royal Society B: Biological Sciences 281 (1786), 20140732, 2014	88	2014
The impact of calibration and clock-model choice on molecular estimates of divergence times S Duchêne, R Lanfear, SYW Ho Molecular phylogenetics and evolution 78, 277-289, 2014	74	2014
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families JL Geoghegan, S Duchêne, EC Holmes PLoS pathogens 13 (2), e1006215, 2017	69	2017
17th Century Variola Virus Reveals the Recent History of Smallpox D Duggan, AT, Perdomo MF, Piombino-Mascali, S Marciniak, D Poinar, ... Current Biology, 2016	59	2016
The performance of the date-randomization test in phylogenetic analyses of time-structured virus data S Duchêne, D Duchêne, EC Holmes, SYW Ho Molecular Biology and Evolution 32 (7), 1895-1906, 2015	57	2015
Genome-scale rates of evolutionary change in bacteria S Duchêne, KE Holt, FX Weill, SL Hello, J Hawkey, DJ Edwards, ... Microbial Genomics, 2016	54	2016
Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago HD Nguyen, Y Tomitaka, SYW Ho, S Duchêne, HJ Vetten, D Lesemann, ... PLoS One 8 (2), e55336, 2013	49	2013
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages SYW Ho, S Duchêne, D Duchêne Molecular ecology resources 15 (4), 688-696, 2015	41	2015
ClockstaR: Choosing the number of relaxed-clock models in molecular phylogenetic analysis S Duchêne, M Molak, SYW Ho Bioinformatics, 2013	41	2013
Marine turtle mitogenome phylogenetics and evolution S Duchene, A Frey, A Alfaro-Núñez, PH Dutton, MTP Gilbert, PA Morin Molecular phylogenetics and evolution 65 (1), 241-250, 2012	38	2012
Geographic and temporal dynamics of a global radiation and diversification in the killer whale PA Morin, KM Parsons, FI Archer, MC Ávila‐Arcos, LG Barrett‐Lennard, ... Molecular Ecology 24 (15), 3964-3979, 2015	35	2015
Comment on “Phylogenomics resolves the timing and pattern of insect evolution” KJ Tong, S Duchêne, SYW Ho, N Lo Science 349 (6247), 487-487, 2015	35	2015
Phylogeography, genetic diversity and population structure of common bottlenose dolphins in the Wider Caribbean inferred from analyses of mitochondrial DNA control region … S Caballero, V Islas‐Villanueva, G Tezanos‐Pinto, S Duchene, ... Animal Conservation 15 (1), 95-112, 2012	35	2012
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts C Troupin, L Dacheux, M Tanguy, C Sabeta, H Blanc, C Bouchier, ... PLOS Pathogens, 2016	30	2016
The temporal evolution and global spread of Cauliflower mosaic virus, a plant pararetrovirus R Yasaka, HD Nguyen, SYW Ho, S Duchêne, S Korkmaz, N Katis, ... PLoS One 9 (1), e85641, 2014	30	2014
Time-dependent estimates of molecular evolutionary rates: evidence and causes SYW Ho, S Duchene, M Molak, B Shapiro Molecular Ecology 24 (24), 6007-6012, 2015	27	2015
Declining transition/transversion ratios through time reveal limitations to the accuracy of nucleotide substitution models S Duchêne, SYW Ho, EC Holmes BMC evolutionary biology 15 (1), 36, 2015	27	2015

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