Sebastian Duchene
Sebastian Duchene
Australian Research Council DECRA fellow, University of Melbourne
Verified email at - Homepage
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BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S DuchÍne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
LS Weyrich, S Duchene, J Soubrier, L Arriola, B Llamas, J Breen, ...
Nature 544 (7650), 357-361, 2017
Molecular‐clock methods for estimating evolutionary rates and timescales
SYW Ho, S DuchÍne
Molecular ecology 23 (24), 5947-5965, 2014
Genome-scale rates of evolutionary change in bacteria
S DuchÍne, KE Holt, FX Weill, SL Hello, J Hawkey, DJ Edwards, ...
Microbial Genomics, 2016
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families
JL Geoghegan, S DuchÍne, EC Holmes
PLoS pathogens 13 (2), e1006215, 2017
Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates
S DuchÍne, EC Holmes, SYW Ho
Proceedings of the Royal Society B: Biological Sciences 281 (1786), 20140732, 2014
Temporal signal and the phylodynamic threshold of SARS-CoV-2
S Duchene, L Featherstone, M Haritopoulou-Sinanidou, A Rambaut, ...
Virus Evolution, 2020
17th Century Variola Virus Reveals the Recent History of Smallpox
D Duggan, AT, Perdomo MF, Piombino-Mascali, S Marciniak, D Poinar, ...
Current Biology, 2016
The impact of calibration and clock-model choice on molecular estimates of divergence times
S DuchÍne, R Lanfear, SYW Ho
Molecular phylogenetics and evolution 78, 277-289, 2014
Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation
S DuchÍne, FI Archer, J Vilstrup, S Caballero, PA Morin
PloS one 6 (11), e27138, 2011
The performance of the date-randomization test in phylogenetic analyses of time-structured virus data
S DuchÍne, D DuchÍne, EC Holmes, SYW Ho
Molecular Biology and Evolution 32 (7), 1895-1906, 2015
Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae
KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ...
PLoS genetics 15 (4), e1008114, 2019
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
MMC Lam, KL Wyres, S DuchÍne, RR Wick, LM Judd, YH Gan, CH Hoh, ...
Nature communications 9 (1), 1-10, 2018
Tracking the COVID-19 pandemic in Australia using genomics
T Seemann, C Lane, N Sherry, S Duchene, AG da Silva, L Caly, M Sait, ...
Nature Communications 11, 4376, 2020
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts
C Troupin, L Dacheux, M Tanguy, C Sabeta, H Blanc, C Bouchier, ...
PLOS Pathogens, 2016
Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago
HD Nguyen, Y Tomitaka, SYW Ho, S DuchÍne, HJ Vetten, D Lesemann, ...
PloS one 8 (2), e55336, 2013
Bayesian molecular dating: opening up the black box
L Bromham, S DuchÍne, X Hua, AM Ritchie, DA DuchÍne, SYW Ho
Biological Reviews, 2018
Marine turtle mitogenome phylogenetics and evolution
S Duchene, A Frey, A Alfaro-NķŮez, PH Dutton, MTP Gilbert, PA Morin
Molecular phylogenetics and evolution 65 (1), 241-250, 2012
Comment on “Phylogenomics resolves the timing and pattern of insect evolution”
KJ Tong, S DuchÍne, SYW Ho, N Lo
Science 349 (6247), 487-487, 2015
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
SYW Ho, S DuchÍne, D DuchÍne
Molecular ecology resources 15 (4), 688-696, 2015
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