| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 514 | 2019 |
| Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus LS Weyrich, S Duchene, J Soubrier, L Arriola, B Llamas, J Breen, ... Nature 544 (7650), 357-361, 2017 | 261 | 2017 |
| Molecular‐clock methods for estimating evolutionary rates and timescales SYW Ho, S Duchêne Molecular ecology 23 (24), 5947-5965, 2014 | 237 | 2014 |
| Genome-scale rates of evolutionary change in bacteria S Duchêne, KE Holt, FX Weill, SL Hello, J Hawkey, DJ Edwards, ... Microbial Genomics, 2016 | 138 | 2016 |
| Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates S Duchêne, EC Holmes, SYW Ho Proceedings of the Royal Society B: Biological Sciences 281 (1786), 20140732, 2014 | 136 | 2014 |
| Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families JL Geoghegan, S Duchêne, EC Holmes PLoS pathogens 13 (2), e1006215, 2017 | 135 | 2017 |
| 17th Century Variola Virus Reveals the Recent History of Smallpox D Duggan, AT, Perdomo MF, Piombino-Mascali, S Marciniak, D Poinar, ... Current Biology, 2016 | 123 | 2016 |
| Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation S Duchêne, FI Archer, J Vilstrup, S Caballero, PA Morin PloS one 6 (11), e27138, 2011 | 118 | 2011 |
| The impact of calibration and clock-model choice on molecular estimates of divergence times S Duchêne, R Lanfear, SYW Ho Molecular phylogenetics and evolution 78, 277-289, 2014 | 112 | 2014 |
| The performance of the date-randomization test in phylogenetic analyses of time-structured virus data S Duchêne, D Duchêne, EC Holmes, SYW Ho Molecular Biology and Evolution 32 (7), 1895-1906, 2015 | 109 | 2015 |
| Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago HD Nguyen, Y Tomitaka, SYW Ho, S Duchêne, HJ Vetten, D Lesemann, ... PloS one 8 (2), e55336, 2013 | 87 | 2013 |
| Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts C Troupin, L Dacheux, M Tanguy, C Sabeta, H Blanc, C Bouchier, ... PLOS Pathogens, 2016 | 86 | 2016 |
| Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ... Nature communications 9 (1), 1-10, 2018 | 81 | 2018 |
| Marine turtle mitogenome phylogenetics and evolution S Duchene, A Frey, A Alfaro-Núñez, PH Dutton, MTP Gilbert, PA Morin Molecular phylogenetics and evolution 65 (1), 241-250, 2012 | 76 | 2012 |
| Bayesian molecular dating: opening up the black box L Bromham, S Duchêne, X Hua, AM Ritchie, DA Duchêne, SYW Ho Biological Reviews, 2018 | 71 | 2018 |
| Simulating and detecting autocorrelation of molecular evolutionary rates among lineages SYW Ho, S Duchêne, D Duchêne Molecular ecology resources 15 (4), 688-696, 2015 | 67 | 2015 |
| Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae KL Wyres, RR Wick, LM Judd, R Froumine, A Tokolyi, CL Gorrie, ... PLoS genetics 15 (4), e1008114, 2019 | 64 | 2019 |
| Comment on “Phylogenomics resolves the timing and pattern of insect evolution” KJ Tong, S Duchêne, SYW Ho, N Lo Science 349 (6247), 487-487, 2015 | 61 | 2015 |
| Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive para C lineage for millennia Z Zhou, I Lundstrøm, A Tran-Dien, S Duchêne, NF Alikhan, MJ Sergeant, ... Current Biology 28 (15), 2420-2428. e10, 2018 | 56* | 2018 |
| The paradox of HBV evolution as revealed from a 16th century mummy ZP Ross, J Klunk, G Fornaciari, V Giuffra, S Duchêne, AT Duggan, ... PLoS pathogens 14 (1), e1006750, 2018 | 54 | 2018 |
Simon HoProfessor of Molecular Evolution, University of SydneyVerified email at sydney.edu.au
