Sebastian Duchene
Sebastian Duchene
Australian Research Council DECRA fellow, University of Melbourne
Verified email at unimelb.edu.au - Homepage
TitleCited byYear
Molecular‐clock methods for estimating evolutionary rates and timescales
SYW Ho, S Duchêne
Molecular ecology 23 (24), 5947-5965, 2014
1962014
Neanderthal behaviour, diet, and disease inferred from ancient DNA in dental calculus
LS Weyrich, S Duchene, J Soubrier, L Arriola, B Llamas, J Breen, ...
Nature 544 (7650), 357-361, 2017
1842017
Analyses of evolutionary dynamics in viruses are hindered by a time-dependent bias in rate estimates
S Duchêne, EC Holmes, SYW Ho
Proceedings of the Royal Society B: Biological Sciences 281 (1786), 20140732, 2014
1122014
Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families
JL Geoghegan, S Duchêne, EC Holmes
PLoS pathogens 13 (2), e1006215, 2017
1052017
Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation
S Duchêne, FI Archer, J Vilstrup, S Caballero, PA Morin
PloS one 6 (11), 2011
1032011
Genome-scale rates of evolutionary change in bacteria
S Duchêne, KE Holt, FX Weill, SL Hello, J Hawkey, DJ Edwards, ...
Microbial Genomics, 2016
1002016
The impact of calibration and clock-model choice on molecular estimates of divergence times
S Duchêne, R Lanfear, SYW Ho
Molecular phylogenetics and evolution 78, 277-289, 2014
932014
The performance of the date-randomization test in phylogenetic analyses of time-structured virus data
S Duchêne, D Duchêne, EC Holmes, SYW Ho
Molecular Biology and Evolution 32 (7), 1895-1906, 2015
812015
17th Century Variola Virus Reveals the Recent History of Smallpox
D Duggan, AT, Perdomo MF, Piombino-Mascali, S Marciniak, D Poinar, ...
Current Biology, 2016
772016
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
712019
Turnip mosaic potyvirus probably first spread to Eurasian brassica crops from wild orchids about 1000 years ago
HD Nguyen, Y Tomitaka, SYW Ho, S Duchêne, HJ Vetten, D Lesemann, ...
PLoS One 8 (2), 2013
652013
Marine turtle mitogenome phylogenetics and evolution
S Duchene, A Frey, A Alfaro-Núñez, PH Dutton, MTP Gilbert, PA Morin
Molecular phylogenetics and evolution 65 (1), 241-250, 2012
542012
Comment on “Phylogenomics resolves the timing and pattern of insect evolution”
KJ Tong, S Duchêne, SYW Ho, N Lo
Science 349 (6247), 487-487, 2015
522015
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
SYW Ho, S Duchêne, D Duchêne
Molecular ecology resources 15 (4), 688-696, 2015
522015
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts
C Troupin, L Dacheux, M Tanguy, C Sabeta, H Blanc, C Bouchier, ...
PLOS Pathogens, 2016
492016
ClockstaR: Choosing the number of relaxed-clock models in molecular phylogenetic analysis
S Duchêne, M Molak, SYW Ho
Bioinformatics, 2013
462013
Bayesian molecular dating: opening up the black box
L Bromham, S Duchêne, X Hua, AM Ritchie, DA Duchêne, SYW Ho
Biological Reviews, 2018
432018
Geographic and temporal dynamics of a global radiation and diversification in the killer whale
PA Morin, KM Parsons, FI Archer, MC Ávila‐Arcos, LG Barrett‐Lennard, ...
Molecular Ecology 24 (15), 3964-3979, 2015
432015
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
MMC Lam, KL Wyres, S Duchêne, RR Wick, LM Judd, YH Gan, CH Hoh, ...
Nature communications 9 (1), 1-10, 2018
402018
Phylogeography, genetic diversity and population structure of common bottlenose dolphins in the W ider C aribbean inferred from analyses of mitochondrial DNA control region …
S Caballero, V Islas‐Villanueva, G Tezanos‐Pinto, S Duchene, ...
Animal Conservation 15 (1), 95-112, 2012
392012
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