Jasper J. Koehorst
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RNA targeting by the type III-A CRISPR-Cas Csm complex of Thermus thermophilus
RHJ Staals, Y Zhu, DW Taylor, JE Kornfeld, K Sharma, A Barendregt, ...
Molecular cell 56 (4), 518-530, 2014
Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus
RHJ Staals, Y Agari, S Maki-Yonekura, Y Zhu, DW Taylor, E Van Duijn, ...
Molecular cell 52 (1), 135-145, 2013
Reverse methanogenesis and respiration in methanotrophic archaea
PHA Timmers, CU Welte, JJ Koehorst, CM Plugge, MSM Jetten, ...
Archaea 2017, 2017
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
P Worm, JJ Koehorst, M Visser, VT Sedano-Núñez, PJ Schaap, ...
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1837 (12), 2004-2016, 2014
Capturing the biofuel wellhead and powerhouse: the chloroplast and mitochondrial genomes of the leguminous feedstock tree Pongamia pinnata
SH Kazakoff, M Imelfort, D Edwards, J Koehorst, B Biswas, J Batley, ...
PLoS One 7 (12), e51687, 2012
Differential translation tunes uneven production of operon-encoded proteins
TEF Quax, YI Wolf, JJ Koehorst, O Wurtzel, R van der Oost, W Ran, ...
Cell reports 4 (5), 938-944, 2013
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, P Babaei, JA Bartell, ...
BioRxiv, 350991, 2018
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
JJ Koehorst, JCJ Van Dam, RGA Van Heck, E Saccenti, ...
Scientific reports 6 (1), 1-13, 2016
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
JJ Koehorst, JCJ van Dam, E Saccenti, VAP Martins dos Santos, ...
Bioinformatics 34 (8), 1401-1403, 2018
Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice
A Fiebig, TG Loof, A Babbar, A Itzek, JJ Koehorst, PJ Schaap, ...
International Journal of Medical Microbiology 305 (6), 532-543, 2015
Effects of Argonaute on gene expression in Thermus thermophilus
DC Swarts, JJ Koehorst, ER Westra, PJ Schaap, J van der Oost
PloS one 10 (4), e0124880, 2015
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
JJ Koehorst, E Saccenti, PJ Schaap, VAPM Dos Santos, M Suarez-Diez
F1000Research 5, 2016
NG-Tax 2.0: A semantic framework for high-throughput amplicon analysis
W Poncheewin, GDA Hermes, JCJ Van Dam, JJ Koehorst, H Smidt, ...
Frontiers in genetics 10, 1366, 2020
Genome and proteome analysis of Pseudomonas chloritidismutans AW‐1T that grows on n‐decane with chlorate or oxygen as electron acceptor
F Mehboob, MJ Oosterkamp, JJ Koehorst, S Farrakh, T Veuskens, ...
Environmental microbiology 18 (10), 3247-3257, 2016
Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216 T
EF Bosma, JJ Koehorst, SAFT van Hijum, B Renckens, B Vriesendorp, ...
Standards in genomic sciences 11 (1), 1-11, 2016
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
JCJ van Dam, JJ Koehorst, PJ Schaap, VAM Dos Santos, M Suarez-Diez
Journal of biomedical semantics 6 (1), 1-12, 2015
Genome analyses of the carboxydotrophic sulfate-reducers Desulfotomaculum nigrificans and Desulfotomaculum carboxydivorans and reclassification of Desulfotomaculum …
M Visser, SN Parshina, JI Alves, DZ Sousa, IAC Pereira, G Muyzer, ...
Standards in genomic sciences 9 (3), 655-675, 2014
Comparative Genomics Highlights Symbiotic Capacities and High Metabolic Flexibility of the Marine Genus Pseudovibrio
D Versluis, B Nijsse, MA Naim, JJ Koehorst, J Wiese, JF Imhoff, ...
Genome biology and evolution 10 (1), 125-142, 2018
Persistence of functional protein domains in mycoplasma species and their role in host specificity and synthetic minimal life
T Kamminga, JJ Koehorst, P Vermeij, SJ Slagman, ...
Frontiers in cellular and infection microbiology 7, 31, 2017
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Articles 1–20