| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 3475 | 2005 |
| Antisense transcription in the mammalian transcriptome S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, ... Science 309 (5740), 1564-1566, 2005 | 1761 | 2005 |
| Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006 | 1345 | 2006 |
| A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014 | 1127 | 2014 |
| Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, ... Proceedings of the National Academy of Sciences 100 (26), 15776-15781, 2003 | 787 | 2003 |
| An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010 | 682 | 2010 |
| Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome T Ravasi, H Suzuki, KC Pang, S Katayama, M Furuno, R Okunishi, ... Genome research 16 (1), 11-19, 2006 | 542 | 2006 |
| The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line H Suzuki, ARR Forrest, E Van Nimwegen, CO Daub, PJ Balwierz, ... Nature genetics 41 (5), 553, 2009 | 348 | 2009 |
| Hidden layers of human small RNAs H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ... BMC genomics 9 (1), 1-21, 2008 | 299 | 2008 |
| Androgen‐responsive long noncoding RNA CTBP1‐AS promotes prostate cancer K Takayama, K Horie‐Inoue, S Katayama, T Suzuki, S Tsutsumi, K Ikeda, ... The EMBO journal 32 (12), 1665-1680, 2013 | 222 | 2013 |
| Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, PG Engström, ... PLoS Genet 2 (4), e62, 2006 | 197 | 2006 |
| Unamplified cap analysis of gene expression on a single-molecule sequencer M Kanamori-Katayama, M Itoh, H Kawaji, T Lassmann, S Katayama, ... Genome research 21 (7), 1150-1159, 2011 | 178 | 2011 |
| miR-148a is an androgen-responsive microRNA that promotes LNCaP prostate cell growth by repressing its target CAND1 expression T Murata, K Takayama, S Katayama, T Urano, K Horie-Inoue, K Ikeda, ... Prostate cancer and prostatic diseases 13 (4), 356-361, 2010 | 138 | 2010 |
| Transcriptional network dynamics in macrophage activation R Nilsson, VB Bajic, H Suzuki, D di Bernardo, J Björkegren, S Katayama, ... Genomics 88 (2), 133-142, 2006 | 138 | 2006 |
| The complexity of the mammalian transcriptome S Gustincich, A Sandelin, C Plessy, S Katayama, R Simone, D Lazarevic, ... The Journal of physiology 575 (2), 321-332, 2006 | 129 | 2006 |
| Integration of cap analysis of gene expression and chromatin immunoprecipitation analysis on array reveals genome-wide androgen receptor signaling in prostate cancer cells K Takayama, S Tsutsumi, S Katayama, T Okayama, K Horie-Inoue, ... Oncogene 30 (5), 619-630, 2011 | 98 | 2011 |
| CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis H Kawaji, T Kasukawa, S Fukuda, S Katayama, C Kai, J Kawai, P Carninci, ... Nucleic acids research 34 (suppl_1), D632-D636, 2006 | 93 | 2006 |
| Dynamic usage of transcription start sites within core promoters H Kawaji, MC Frith, S Katayama, A Sandelin, C Kai, J Kawai, P Carninci, ... Genome biology 7 (12), 1-10, 2006 | 88 | 2006 |
| SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization S Katayama, V Töhönen, S Linnarsson, J Kere Bioinformatics 29 (22), 2943-2945, 2013 | 87 | 2013 |
| The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation H Kawaji, J Severin, M Lizio, A Waterhouse, S Katayama, KM Irvine, ... Genome biology 10 (4), 1-8, 2009 | 85 | 2009 |
