Timothy A. Johnson
Timothy A. Johnson
Purdue University, Animal Sciences
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Cited by
Cited by
Diverse and abundant antibiotic resistance genes in Chinese swine farms
YG Zhu, TA Johnson, JQ Su, M Qiao, GX Guo, RD Stedtfeld, ...
Proceedings of the National Academy of Sciences 110 (9), 3435-3440, 2013
CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
B Jia, AR Raphenya, B Alcock, N Waglechner, P Guo, KK Tsang, BA Lago, ...
Nucleic acids research, gkw1004, 2016
In-feed antibiotic effects on the swine intestinal microbiome
T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ...
Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant
A Karkman, TA Johnson, C Lyra, RD Stedtfeld, M Tamminen, JM Tiedje, ...
FEMS microbiology ecology 92 (3), fiw014, 2016
Clusters of antibiotic resistance genes enriched together stay together in swine agriculture
TA Johnson, RD Stedtfeld, Q Wang, JR Cole, SA Hashsham, T Looft, ...
MBio 7 (2), 10.1128/mbio. 02214-15, 2016
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments
WI Muziasari, K Pärnänen, TA Johnson, C Lyra, A Karkman, RD Stedtfeld, ...
FEMS microbiology ecology 92 (4), fiw052, 2016
Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples
S Iwai, TA Johnson, B Chai, SA Hashsham, JM Tiedje
Applied and environmental microbiology 77 (11), 3551-3557, 2011
Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter
CR Penton, TA Johnson, JF Quensen III, S Iwai, JR Cole, JM Tiedje
Frontiers in microbiology 4, 279, 2013
Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential
J Muurinen, J Richert, CL Wickware, B Richert, TA Johnson
Scientific reports 11 (1), 5485, 2021
Dietary fiber hierarchical specificity: The missing link for predictable and strong shifts in gut bacterial communities
TM Cantu-Jungles, N Bulut, E Chambry, A Ruthes, M Iacomini, ...
MBio 12 (3), 10.1128/mbio. 01028-21, 2021
The in-feed antibiotic carbadox induces phage gene transcription in the swine gut microbiome
TA Johnson, T Looft, AJ Severin, DO Bayles, DJ Nasko, KE Wommack, ...
MBio 8 (4), 10.1128/mbio. 00709-17, 2017
Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens
RD Stedtfeld, MR Williams, U Fakher, TA Johnson, TM Stedtfeld, F Wang, ...
FEMS microbiology ecology 92 (3), fiw020, 2016
In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner
TA Johnson, MJ Sylte, T Looft
Scientific reports 9 (1), 8212, 2019
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay
B Chai, TV Tsoi, S Iwai, C Liu, JA Fish, C Gu, TA Johnson, G Zylstra, ...
PLoS One 11 (6), e0157008, 2016
On-farm colorimetric detection of Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni in crude bovine nasal samples
A Pascual-Garrigos, MK Maruthamuthu, A Ault, JL Davidson, G Rudakov, ...
Veterinary research 52, 1-12, 2021
Composition and diversity of the preputial microbiota in healthy bulls
CL Wickware, TA Johnson, JH Koziol
Theriogenology 145, 231-237, 2020
Identification of bovine respiratory disease through the nasal microbiome
RE Centeno-Martinez, N Glidden, S Mohan, JL Davidson, ...
Animal microbiome 4 (1), 15, 2022
Composition and diversity of the seminal microbiota in bulls and its association with semen parameters
JH Koziol, T Sheets, CL Wickware, TA Johnson
Theriogenology 182, 17-25, 2022
Loop-Mediated Isothermal Amplification for the Detection of Pasteurella multocida, Mannheimia haemolytica, and Histophilus somni in Bovine Nasal Samples
S Mohan, A Pascual-Garrigos, H Brouwer, D Pillai, J Koziol, A Ault, ...
ACS Agricultural Science & Technology 1 (2), 100-108, 2021
Evaluation of nucleic acid isothermal amplification methods for human clinical microbial infection detection
BE Etchebarne, Z Li, RD Stedtfeld, MC Nicholas, MR Williams, ...
Frontiers in Microbiology 8, 2211, 2017
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