Ziheng Yang
TitleCited byYear
PAML: phylogenetic analysis by maximum likelihood
Z Yang
Mol. Biol. Evol 24, 1586-1591, 2007
70972007
PAML: a program package for phylogenetic analysis by maximum likelihood
Z Yang
Computer applications in the biosciences: CABIOS 13 (5), 555-556, 1997
49311997
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
Z Yang
Journal of Molecular evolution 39 (3), 306-314, 1994
23251994
Codon-substitution models for heterogeneous selection pressure at amino acid sites
Z Yang, R Nielsen, N Goldman, AMK Pedersen
Genetics 155 (1), 431-449, 2000
22232000
A codon-based model of nucleotide substitution for protein-coding DNA sequences.
N Goldman, Z Yang
Molecular biology and evolution 11 (5), 725-736, 1994
19381994
Bayes empirical Bayes inference of amino acid sites under positive selection
Z Yang, WSW Wong, R Nielsen
Molecular biology and evolution 22 (4), 1107-1118, 2005
17192005
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene
R Nielsen, Z Yang
Genetics 148 (3), 929-936, 1998
16001998
Statistical methods for detecting molecular adaptation
Z Yang, JP Bielawski
Trends in Ecology & Evolution 15 (12), 496-503, 2000
15092000
Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference
B Rannala, Z Yang
Journal of molecular evolution 43 (3), 304-311, 1996
14081996
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
Z Yang, R Nielsen
Molecular biology and evolution 17 (1), 32-43, 2000
13162000
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
J Zhang, R Nielsen, Z Yang
Molecular biology and evolution 22 (12), 2472-2479, 2005
13122005
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution.
Z Yang
Molecular biology and evolution 15 (5), 568-573, 1998
12851998
Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method.
Z Yang, B Rannala
Molecular biology and evolution 14 (7), 717-724, 1997
11961997
Among-site rate variation and its impact on phylogenetic analyses
Z Yang
Trends in Ecology & Evolution 11 (9), 367-372, 1996
11641996
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
Z Yang, R Nielsen
Molecular biology and evolution 19 (6), 908-917, 2002
11062002
Computational molecular evolution
Z Yang
Oxford University Press, 2006
10892006
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
Z Yang
Molecular Biology and Evolution 10 (6), 1396-1401, 1993
10571993
Estimating the pattern of nucleotide substitution
Z Yang
Journal of Molecular Evolution 39 (1), 105-111, 1994
10121994
Bayesian species delimitation using multilocus sequence data
Z Yang, B Rannala
Proceedings of the National Academy of Sciences 107 (20), 9264-9269, 2010
9062010
Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci
B Rannala, Z Yang
Genetics 164 (4), 1645-1656, 2003
7792003
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