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A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013 | 1214 | 2013 |
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LibSBML: an API library for SBML BJ Bornstein, SM Keating, A Jouraku, M Hucka Bioinformatics 24 (6), 880-881, 2008 | 501 | 2008 |
BioModels—15 years of sharing computational models in life science RS Malik-Sheriff, M Glont, TVN Nguyen, K Tiwari, MG Roberts, A Xavier, ... Nucleic acids research 48 (D1), D407-D415, 2020 | 352 | 2020 |
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011 | 344 | 2011 |
BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2015 | 326 | 2015 |
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ... Systems biology 1 (1), 41-53, 2004 | 326 | 2004 |
SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 241 | 2020 |
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ... BMC systems biology 7, 1-15, 2013 | 198 | 2013 |
Path2Models: large-scale generation of computational models from biochemical pathway maps F Büchel, N Rodriguez, N Swainston, C Wrzodek, T Czauderna, R Keller, ... BMC systems biology 7, 1-19, 2013 | 191 | 2013 |
SBMLToolbox: an SBML toolbox for MATLAB users SM Keating, BJ Bornstein, A Finney, M Hucka Bioinformatics 22 (10), 1275-1277, 2006 | 189 | 2006 |
The systems biology markup language (SBML): Language specification for level 3 version 1 core L Smith, D Wilkinson, M Hucka, F Bergmann, S Hoops, S Keating, S Sahle, ... Nature Precedings, 1-1, 2010 | 173* | 2010 |
Wikidata as a knowledge graph for the life sciences A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ... Elife 9, e52614, 2020 | 134 | 2020 |
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The systems biology markup language (SBML): language specification for level 3 version 2 core M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ... Journal of integrative bioinformatics 15 (1), 20170081, 2018 | 92 | 2018 |
Systems biology markup language (SBML) level 2: Structures and facilities for model definitions M Hucka, S Hoops, S Keating, N Le Novère, S Sahle, D Wilkinson Nature Precedings, 1-1, 2008 | 91 | 2008 |
BioModels: content, features, functionality, and use N Juty, R Ali, M Glont, S Keating, N Rodriguez, MJ Swat, SM Wimalaratne, ... CPT: pharmacometrics & systems pharmacology 4 (2), 55-68, 2015 | 85 | 2015 |
Specifications of standards in systems and synthetic biology: status and developments in 2020 F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ... Journal of integrative bioinformatics 17 (2-3), 20200022, 2020 | 40 | 2020 |
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