Allen Rodrigo
Allen Rodrigo
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TitleCited byYear
Likelihood-based tests of topologies in phylogenetics
N Goldman, JP Anderson, AG Rodrigo
Systematic biology 49 (4), 652-670, 2000
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
RAJ Shankarappa, JB Margolick, SJ Gange, AG Rodrigo, D Upchurch, ...
Journal of virology 73 (12), 10489-10502, 1999
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
AJ Drummond, GK Nicholls, AG Rodrigo, W Solomon
Genetics 161 (3), 1307-1320, 2002
Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
S Schmitt, P Tsai, J Bell, J Fromont, M Ilan, N Lindquist, T Perez, ...
The ISME Journal 6 (3), 564, 2012
Time‐dependent rates of molecular evolution
SYW Ho, R Lanfear, L Bromham, MJ Phillips, J Soubrier, AG Rodrigo, ...
Molecular ecology 20 (15), 3087-3101, 2011
Measurably evolving populations
AJ Drummond, OG Pybus, A Rambaut, R Forsberg, AG Rodrigo
Trends in ecology & evolution 18 (9), 481-488, 2003
HIV quasispecies and resampling
SL Liu, AG Rodrigo, R Shankarappa, GH Learn, L Hsu, O Davidov, ...
Science 273 (5274), 413-417, 1996
Description of Caldicellulosiruptor saccharolyticus gen. nov., sp. nov: An obligately anaerobic, extremely thermophilic, cellulolytic bacterium
FA Rainey, AM Donnison, PH Janssen, D Saul, A Rodrigo, PL Bergquist, ...
FEMS microbiology letters 120 (3), 263-266, 1994
Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay.
EL Delwart, B Herring, AG Rodrigo, JI Mullins
Genome Research 4 (5), S202-S216, 1995
Pervasive genomic recombination of HIV-1 in vivo
D Shriner, AG Rodrigo, DC Nickle, JI Mullins
Genetics 167 (4), 1573-1583, 2004
Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology
IM Rouzine, A Rodrigo, JM Coffin
Microbiol. Mol. Biol. Rev. 65 (1), 151-185, 2001
Consensus and ancestral state HIV vaccines
DC Nickle, MA Jensen, GS Gottlieb, D Shriner, GH Learn, AG Rodrigo, ...
Science 299 (5612), 1515-1518, 2003
Genetic diversity of feline immunodeficiency virus: dual infection, recombination, and distinct evolutionary rates among envelope sequence clades.
MH Bachmann, C Mathiason-Dubard, GH Learn, AG Rodrigo, DL Sodora, ...
Journal of virology 71 (6), 4241-4253, 1997
Modeling the site-specific variation of selection patterns along lineages
S Guindon, AG Rodrigo, KA Dyer, JP Huelsenbeck
Proceedings of the National Academy of Sciences 101 (35), 12957-12962, 2004
Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1
M Poss, AG Rodrigo, JJ Gosink, GH Learn, D de Vange Panteleeff, ...
Journal of virology 72 (10), 8240-8251, 1998
Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays
AIDS research and human retroviruses 13 (9), 737-742, 1997
Coalescent approaches
AG Rodrigo, J Felsenstein
Evol. HIV 233, 1999
Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration
HA Ross, AG Rodrigo
Journal of virology 76 (22), 11715-11720, 2002
Human immunodeficiency virus type 1 subtype B ancestral envelope protein is functional and elicits neutralizing antibodies in rabbits similar to those elicited by a circulating …
NA Doria-Rose, GH Learn, AG Rodrigo, DC Nickle, F Li, M Mahalanabis, ...
Journal of virology 79 (17), 11214-11224, 2005
DNA surveillance: web-based molecular identification of whales, dolphins, and porpoises
HA Ross, GM Lento, ML Dalebout, M Goode, G Ewing, P McLaren, ...
Journal of Heredity 94 (2), 111-114, 2003
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