| Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015 | 423 | 2015 |
| A structure‐based benchmark for protein–protein binding affinity PL Kastritis, IH Moal, H Hwang, Z Weng, PA Bates, AMJJ Bonvin, J Janin Protein Science 20 (3), 482-491, 2011 | 327 | 2011 |
| SwarmDock: a server for flexible protein–protein docking M Torchala, IH Moal, RAG Chaleil, J Fernandez-Recio, PA Bates Bioinformatics 29 (6), 807-809, 2013 | 308 | 2013 |
| SKEMPI: a structural kinetic and energetic database of mutant protein interactions and its use in empirical models IH Moal, J Fernández-Recio Bioinformatics 28 (20), 2600-2607, 2012 | 271 | 2012 |
| SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ... Bioinformatics 35 (3), 462-469, 2019 | 238 | 2019 |
| SwarmDock and the use of normal modes in protein-protein docking IH Moal, PA Bates International journal of molecular sciences 11 (10), 3623-3648, 2010 | 175 | 2010 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 164 | 2016 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of Molecular Biology, 2011 | 156 | 2011 |
| Protein–protein binding affinity prediction on a diverse set of structures IH Moal, R Agius, PA Bates Bioinformatics 27 (21), 3002-3009, 2011 | 124 | 2011 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 115 | 2019 |
| The scoring of poses in protein-protein docking: current capabilities and future directions IH Moal, M Torchala, PA Bates, J Fernández-Recio BMC bioinformatics 14, 1-15, 2013 | 112 | 2013 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 111 | 2013 |
| Scoring functions for protein–protein interactions IH Moal, R Moretti, D Baker, J Fernández-Recio Current opinion in structural biology 23 (6), 862-867, 2013 | 96 | 2013 |
| AbLang: an antibody language model for completing antibody sequences TH Olsen, IH Moal, CM Deane Bioinformatics Advances 2 (1), vbac046, 2022 | 79 | 2022 |
| An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants JD Guest, T Vreven, J Zhou, I Moal, JR Jeliazkov, JJ Gray, Z Weng, ... Structure 29 (6), 606-621. e5, 2021 | 75 | 2021 |
| Detection and refinement of encounter complexes for protein–protein docking: taking account of macromolecular crowding X Li, IH Moal, PA Bates Proteins: Structure, Function, and Bioinformatics 78 (15), 3189-3196, 2010 | 74 | 2010 |
| CCharPPI web server: computational characterization of protein–protein interactions from structure IH Moal, B Jiménez-García, J Fernández-Recio Bioinformatics 31 (1), 123-125, 2015 | 68 | 2015 |
| Kinetic rate constant prediction supports the conformational selection mechanism of protein binding IH Moal, PA Bates PLoS computational biology 8 (1), e1002351, 2012 | 62 | 2012 |
| Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014 | 61 | 2014 |
| Intermolecular contact potentials for protein–protein interactions extracted from binding free energy changes upon mutation IH Moal, J Fernandez-Recio Journal of Chemical Theory and Computation 9 (8), 3715-3727, 2013 | 44 | 2013 |
Paul A BatesThe Francis Crick InstituteVerified email at crick.ac.uk
