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Joe Pitt-Francis
Joe Pitt-Francis
University of Oxford, Department of Computer Science
Verified email at cs.ox.ac.uk
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Chaste: an open source C++ library for computational physiology and biology
GR Mirams, CJ Arthurs, MO Bernabeu, R Bordas, J Cooper, A Corrias, ...
PLoS computational biology 9 (3), e1002970, 2013
5132013
Chaste: a test-driven approach to software development for biological modelling
J Pitt-Francis, P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, ...
Computer Physics Communications 180 (12), 2452-2471, 2009
3082009
Multi-scale computational modelling in biology and physiology
J Southern, J Pitt-Francis, J Whiteley, D Stokeley, H Kobashi, R Nobes, ...
Progress in biophysics and molecular biology 96 (1-3), 60-89, 2008
2382008
Comparing individual-based approaches to modelling the self-organization of multicellular tissues
JM Osborne, AG Fletcher, JM Pitt-Francis, PK Maini, DJ Gavaghan
PLoS computational biology 13 (2), e1005387, 2017
2312017
An integrative computational model for intestinal tissue renewal
IMM Van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, ...
Cell proliferation 42 (5), 617-636, 2009
1872009
Cooperation, competition and antibiotic resistance in bacterial colonies
I Frost, WPJ Smith, S Mitri, AS Millan, Y Davit, JM Osborne, JM Pitt-Francis, ...
The ISME journal 12 (6), 1582-1593, 2018
1822018
Cell morphology drives spatial patterning in microbial communities
WPJ Smith, Y Davit, JM Osborne, W Kim, KR Foster, JM Pitt-Francis
Proceedings of the National Academy of Sciences 114 (3), E280-E286, 2017
1722017
A computational study of discrete mechanical tissue models
P Pathmanathan, J Cooper, A Fletcher, G Mirams, P Murray, J Osborne, ...
Physical biology 6 (3), 036001, 2009
1482009
Computational assessment of drug‐induced effects on the electrocardiogram: from ion channel to body surface potentials
N Zemzemi, MO Bernabeu, J Saiz, J Cooper, P Pathmanathan, ...
British journal of pharmacology 168 (3), 718-733, 2013
1312013
Development of a functional magnetic resonance imaging simulator for modeling realistic rigid‐body motion artifacts
I Drobnjak, D Gavaghan, E Süli, J Pitt‐Francis, M Jenkinson
Magnetic Resonance in Medicine: An Official Journal of the International …, 2006
1272006
Chaste: using agile programming techniques to develop computational biology software
J Pitt-Francis, MO Bernabeu, J Cooper, A Garny, L Momtahan, J Osborne, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2008
1072008
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology
P Pathmanathan, MO Bernabeu, R Bordas, J Cooper, A Garny, ...
Progress in biophysics and molecular biology 102 (2-3), 136-155, 2010
1022010
Chaste: cancer, heart and soft tissue environment
FR Cooper, RE Baker, MO Bernabeu, R Bordas, L Bowler, ...
Journal of Open Source Software 5 (47), 2020
752020
Ten simple rules for a successful cross-disciplinary collaboration
B Knapp, R Bardenet, MO Bernabeu, R Bordas, M Bruna, B Calderhead, ...
PLoS Computational Biology 11 (4), e1004214, 2015
702015
Development and analysis of patient-based complete conducting airways models
R Bordas, C Lefevre, B Veeckmans, J Pitt-Francis, C Fetita, CE Brightling, ...
PloS one 10 (12), e0144105, 2015
682015
Simulation of cardiac electrophysiology on next-generation high-performance computers
R Bordas, B Carpentieri, G Fotia, F Maggio, R Nobes, J Pitt-Francis, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009
602009
Ten simple rules for effective computational research
JM Osborne, MO Bernabeu, M Bruna, B Calderhead, J Cooper, ...
PLoS Computational Biology 10 (3), e1003506, 2014
592014
Bayesian calibration, validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial
J Collis, AJ Connor, M Paczkowski, P Kannan, J Pitt-Francis, HM Byrne, ...
Bulletin of mathematical biology 79, 939-974, 2017
552017
Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation
MO Bernabeu, J Köry, JA Grogan, B Markelc, A Beardo, M d’Avezac, ...
Proceedings of the National Academy of Sciences 117 (45), 27811-27819, 2020
522020
Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2
A Sadrieh, L Domanski, J Pitt-Francis, SA Mann, EC Hodkinson, CA Ng, ...
Nature communications 5 (1), 5069, 2014
522014
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