Jernej Ule
Jernej Ule
The Francis Crick Institute and UCL Institute of Neurology
Verified email at ucl.ac.uk - Homepage
TitleCited byYear
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
DD Licatalosi, A Mele, JJ Fak, J Ule, M Kayikci, SW Chi, TA Clark, ...
Nature 456 (7221), 464, 2008
11442008
CLIP identifies Nova-regulated RNA networks in the brain
J Ule, KB Jensen, M Ruggiu, A Mele, A Ule, RB Darnell
Science 302 (5648), 1212-1215, 2003
9622003
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
J König, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
Nature structural & molecular biology 17 (7), 909, 2010
7772010
Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
JR Tollervey, T Curk, B Rogelj, M Briese, M Cereda, M Kayikci, J König, ...
Nature neuroscience 14 (4), 452, 2011
7192011
CLIP: a method for identifying protein–RNA interaction sites in living cells
J Ule, K Jensen, A Mele, RB Darnell
Methods 37 (4), 376-386, 2005
5772005
An RNA map predicting Nova-dependent splicing regulation
J Ule, G Stefani, A Mele, M Ruggiu, X Wang, B Taneri, T Gaasterland, ...
Nature 444 (7119), 580, 2006
5232006
Nova regulates brain-specific splicing to shape the synapse
J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ...
Nature genetics 37 (8), 844-852, 2005
4772005
TDP‐43 regulates its mRNA levels through a negative feedback loop
YM Ayala, L De Conti, SE Avendańo‐Vázquez, A Dhir, M Romano, ...
The EMBO journal 30 (2), 277-288, 2011
3772011
Protein–RNA interactions: new genomic technologies and perspectives
J König, K Zarnack, NM Luscombe, J Ule
Nature Reviews Genetics 13 (2), 77, 2012
3582012
Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic
YB Lee, HJ Chen, JN Peres, J Gomez-Deza, J Attig, M Štalekar, ...
Cell reports 5 (5), 1178-1186, 2013
3012013
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ...
Cell 152 (3), 453-466, 2013
2602013
The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes
D Blazek, J Kohoutek, K Bartholomeeusen, E Johansen, P Hulinkova, ...
Genes & development 25 (20), 2158-2172, 2011
2512011
iCLIP: protein–RNA interactions at nucleotide resolution
I Huppertz, J Attig, A D’Ambrogio, LE Easton, CR Sibley, Y Sugimoto, ...
Methods 65 (3), 274-287, 2014
2342014
Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing
MM Pradeepa, HG Sutherland, J Ule, GR Grimes, WA Bickmore
PLoS genetics 8 (5), e1002717, 2012
2322012
NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
S Hussain, AA Sajini, S Blanco, S Dietmann, P Lombard, Y Sugimoto, ...
Cell reports 4 (2), 255-261, 2013
2172013
Widespread binding of FUS along nascent RNA regulates alternative splicing in the brain
B Rogelj, LE Easton, GK Bogu, LW Stanton, G Rot, T Curk, B Zupan, ...
Scientific reports 2, 603, 2012
2022012
Aberrant methylation of tRNAs links cellular stress to neuro‐developmental disorders
S Blanco, S Dietmann, JV Flores, S Hussain, C Kutter, P Humphreys, ...
The EMBO journal 33 (18), 2020-2039, 2014
1992014
Understanding splicing regulation through RNA splicing maps
JT Witten, J Ule
Trends in Genetics 27 (3), 89-97, 2011
1992011
iCLIP predicts the dual splicing effects of TIA-RNA interactions
Z Wang, M Kayikci, M Briese, K Zarnack, NM Luscombe, G Rot, B Zupan, ...
PLoS biology 8 (10), e1000530, 2010
1992010
iCLIP-transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution
J Konig, K Zarnack, G Rot, T Curk, M Kayikci, B Zupan, DJ Turner, ...
JoVE (Journal of Visualized Experiments), e2638, 2011
1892011
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Articles 1–20