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Taiyun Kim
Taiyun Kim
Bioinformatician / Data Scientist, University of Sydney
Verified email at sydney.edu.au
Title
Cited by
Cited by
Year
Impact of similarity metrics on single-cell RNA-seq data clustering
T Kim, IR Chen, Y Lin, AYY Wang, JYH Yang, P Yang
Briefings in bioinformatics 20 (6), 2316-2326, 2019
1232019
PhosR enables processing and functional analysis of phosphoproteomic data
HJ Kim, T Kim, NJ Hoffman, D Xiao, DE James, SJ Humphrey, P Yang
Cell Reports 34 (8), 108771, 2021
532021
Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis
TA Geddes, T Kim, L Nan, JG Burchfield, JYH Yang, D Tao, P Yang
BMC bioinformatics 20 (19), 1-11, 2019
522019
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells
P Yang, A Oldfield, T Kim, A Yang, JYH Yang, JWK Ho
Bioinformatics 33 (13), 1916-1920, 2017
232017
A hierarchical approach to removal of unwanted variation for large-scale metabolomics data
T Kim, O Tang, ST Vernon, KA Kott, YC Koay, J Park, DE James, ...
Nature Communications 12 (1), 1-10, 2021
212021
scReClassify: post hoc cell type classification of single-cell rNA-seq data
T Kim, K Lo, TA Geddes, HJ Kim, JYH Yang, P Yang
BMC genomics 20 (9), 1-10, 2019
172019
Metabolic Signatures in Coronary Artery Disease: Results from the BioHEART-CT Study
ST Vernon, O Tang, T Kim, AS Chan, KA Kott, J Park, T Hansen, YC Koay, ...
Cells 10 (5), 980, 2021
142021
Protocol for the processing and downstream analysis of phosphoproteomic data with PhosR
HJ Kim, T Kim, D Xiao, P Yang
STAR protocols 2 (2), 100585, 2021
82021
hRUV: Hierarchical approach to removal of unwanted variation for large-scale metabolomics data
T Kim, O Tang, S Vernon, K Kott, YC Koay, J Park, D James, T Speed, ...
52021
QCMAP: An Interactive Web‐Tool for Performance Diagnosis and Prediction of LC‐MS Systems
T Kim, IR Chen, BL Parker, SJ Humphrey, B Crossett, SJ Cordwell, ...
Proteomics 19 (13), 1900068, 2019
52019
Integrative analysis reveals histone demethylase LSD1 promotes RNA polymerase II pausing
HJ Kim, P Li, T Kim, AJ Oldfield, X Zheng, P Yang
Iscience 25 (10), 2022
32022
001 The Utility of the P2X7 Receptor as a Diagnostic and Therapeutic Target in Atherosclerosis and Efficacy of a Novel P2X7 Receptor Antagonist
T Hansen, K Bubb, H McGuire, T Kim, S Vernon, K Kott, J Yang, ...
Heart, Lung and Circulation 29, S37, 2020
12020
PAD2: interactive exploration of transcription factor genomic colocalization using ChIP-seq data
T Kim, HJ Kim, AJ Oldfield, P Yang
STAR protocols 4 (2), 102203, 2023
2023
Circulating immune cell profiles detected by mass cytometry differ significantly between patients with predominantly calcified and predominantly non-calcified coronary …
KA Kott, T Hansen, M De Dreu, ST Vernon, T Kim, JJ Yang, ...
European Heart Journal 41 (Supplement_2), ehaa946. 1296, 2020
2020
Integrative Analysis Reveals Histone Demethylase LSD1/KDM1A Associates with RNA Polymerase II Pausing
HJ Kim, T Kim, AJ Oldfield, P Yang
bioRxiv, 2020
2020
302 Circulating Immune Cell Profiles Detected by Mass Cytometry Differ Significantly between Patients with Predominantly Calcified and Predominantly Non-Calcified Coronary …
K Kott, S Vernon, T Hansen, M de Dreu, T Kim, J Yang, BF De St Groth, ...
Heart, Lung and Circulation 29, S169, 2020
2020
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