Jana Sperschneider
Jana Sperschneider
ARC DECRA Fellow - The Australian National University
Verified email at csiro.au - Homepage
TitleCited byYear
EffectorP: predicting fungal effector proteins from secretomes using machine learning
J Sperschneider, DM Gardiner, PN Dodds, F Tini, L Covarelli, KB Singh, ...
New Phytologist 210 (2), 743-761, 2016
Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8
JK Hane, JP Anderson, AH Williams, J Sperschneider, KB Singh
PLoS genetics 10 (5), e1004281, 2014
Advances and challenges in computational prediction of effectors from plant pathogenic fungi
J Sperschneider, PN Dodds, DM Gardiner, JM Manners, KB Singh, ...
PLoS pathogens 11 (5), e1004806, 2015
DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model
J Sperschneider, A Datta
Nucleic acids research 38 (7), e103-e103, 2010
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
J Sperschneider, AM Catanzariti, K DeBoer, B Petre, DM Gardiner, ...
Scientific reports 7, 44598, 2017
Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity
J Sperschneider, DM Gardiner, LF Thatcher, R Lyons, KB Singh, ...
Genome biology and evolution 7 (6), 1613-1627, 2015
Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins
J Sperschneider, A Datta, MJ Wise
Rna 17 (1), 27-38, 2011
Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes
NM Upadhyaya, DP Garnica, H Karaoglu, J Sperschneider, A Nemri, B Xu, ...
Frontiers in plant science 5, 759, 2015
KnotSeeker: Heuristic pseudoknot detection in long RNA sequences
J Sperschneider, A Datta
Rna 14 (4), 630-640, 2008
Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
AH Williams, M Sharma, LF Thatcher, S Azam, JK Hane, J Sperschneider, ...
BMC genomics 17 (1), 191, 2016
Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors
J Sperschneider, H Ying, PN Dodds, DM Gardiner, NM Upadhyaya, ...
Frontiers in plant science 5, 372, 2014
Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat
J Chen, NM Upadhyaya, D Ortiz, J Sperschneider, F Li, C Bouton, ...
Science 358 (6370), 1607-1610, 2017
Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
J Sperschneider, AH Williams, JK Hane, KB Singh, JM Taylor
Frontiers in plant science 6, 1168, 2015
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds, DM Gardiner, KB Singh, JM Taylor
Molecular plant pathology 19 (9), 2094-2110, 2018
ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning
J Sperschneider, PN Dodds, KB Singh, JM Taylor
New Phytologist 217 (4), 1764-1778, 2018
Bioinformatics: problem solving paradigms
V Sperschneider
Springer Science & Business Media, 2008
A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi
J Sperschneider, DM Gardiner, JM Taylor, JK Hane, KB Singh, ...
BMC genomics 14 (1), 807, 2013
Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici
M Figueroa, NM Upadhyaya, J Sperschneider, RF Park, LJ Szabo, ...
Frontiers in plant science 7, 205, 2016
A near-complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high interhaplotype diversity
B Schwessinger, J Sperschneider, WS Cuddy, DP Garnica, ME Miller, ...
MBio 9 (1), e02275-17, 2018
De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust
ME Miller, Y Zhang, V Omidvar, J Sperschneider, B Schwessinger, ...
MBio 9 (1), e01650-17, 2018
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Articles 1–20