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Jana Sperschneider
Jana Sperschneider
Senior Research Scientist - CSIRO
Verified email at csiro.au - Homepage
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Cited by
Year
EffectorP: predicting fungal effector proteins from secretomes using machine learning
J Sperschneider, DM Gardiner, PN Dodds, F Tini, L Covarelli, KB Singh, ...
New Phytologist 210 (2), 743-761, 2016
3012016
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
J Sperschneider, AM Catanzariti, K DeBoer, B Petre, DM Gardiner, ...
Scientific reports 7 (1), 1-14, 2017
2282017
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds, DM Gardiner, KB Singh, JM Taylor
Molecular plant pathology 19 (9), 2094-2110, 2018
2262018
Advances and challenges in computational prediction of effectors from plant pathogenic fungi
J Sperschneider, PN Dodds, DM Gardiner, JM Manners, KB Singh, ...
PLoS pathogens 11 (5), e1004806, 2015
1522015
Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8
JK Hane, JP Anderson, AH Williams, J Sperschneider, KB Singh
PLoS genetics 10 (5), e1004281, 2014
1422014
Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat
J Chen, NM Upadhyaya, D Ortiz, J Sperschneider, F Li, C Bouton, ...
Science 358 (6370), 1607-1610, 2017
1252017
ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning
J Sperschneider, PN Dodds, KB Singh, JM Taylor
New Phytologist 217 (4), 1764-1778, 2018
1072018
DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model
J Sperschneider, A Datta
Nucleic acids research 38 (7), e103-e103, 2010
912010
Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity
J Sperschneider, DM Gardiner, LF Thatcher, R Lyons, KB Singh, ...
Genome biology and evolution 7 (6), 1613-1627, 2015
812015
Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors
AH Williams, M Sharma, LF Thatcher, S Azam, JK Hane, J Sperschneider, ...
BMC genomics 17 (1), 1-24, 2016
762016
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation
F Li, NM Upadhyaya, J Sperschneider, O Matny, H Nguyen-Phuc, R Mago, ...
Nature communications 10 (1), 1-15, 2019
742019
A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity
B Schwessinger, J Sperschneider, WS Cuddy, DP Garnica, ME Miller, ...
MBio 9 (1), e02275-17, 2018
692018
Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes
NM Upadhyaya, DP Garnica, H Karaoglu, J Sperschneider, A Nemri, B Xu, ...
Frontiers in plant science 5, 759, 2015
662015
Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
J Sperschneider, AH Williams, JK Hane, KB Singh, JM Taylor
Frontiers in plant science 6, 1168, 2015
572015
Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors
J Sperschneider, H Ying, PN Dodds, DM Gardiner, NM Upadhyaya, ...
Frontiers in plant science 5, 372, 2014
512014
Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins
J Sperschneider, A Datta, MJ Wise
Rna 17 (1), 27-38, 2011
502011
Changing the game: using integrative genomics to probe virulence mechanisms of the stem rust pathogen Puccinia graminis f. sp. tritici
M Figueroa, NM Upadhyaya, J Sperschneider, RF Park, LJ Szabo, ...
Frontiers in Plant Science 7, 205, 2016
432016
Machine learning in plant–pathogen interactions: empowering biological predictions from field scale to genome scale
J Sperschneider
New Phytologist 228 (1), 35-41, 2020
412020
Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
JP Anderson, J Sperschneider, J Win, B Kidd, K Yoshida, J Hane, ...
Scientific reports 7 (1), 1-13, 2017
372017
KnotSeeker: heuristic pseudoknot detection in long RNA sequences
J Sperschneider, A Datta
Rna 14 (4), 630-640, 2008
352008
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Articles 1–20