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Jana Sperschneider
Jana Sperschneider
Senior Research Scientist - CSIRO
Verified email at csiro.au - Homepage
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Cited by
Year
EffectorP: predicting fungal effector proteins from secretomes using machine learning
J Sperschneider, DM Gardiner, PN Dodds, F Tini, L Covarelli, KB Singh, ...
New Phytologist 210 (2), 743-761, 2016
3912016
LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell
J Sperschneider, AM Catanzariti, K DeBoer, B Petre, DM Gardiner, ...
Scientific reports 7 (1), 44598, 2017
3512017
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
J Sperschneider, PN Dodds, DM Gardiner, KB Singh, JM Taylor
Molecular plant pathology 19 (9), 2094-2110, 2018
3502018
EffectorP 3.0: prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes
J Sperschneider, PN Dodds
Molecular plant-microbe interactions 35 (2), 146-156, 2022
2062022
Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat
J Chen, NM Upadhyaya, D Ortiz, J Sperschneider, F Li, C Bouton, ...
Science 358 (6370), 1607-1610, 2017
1972017
Advances and challenges in computational prediction of effectors from plant pathogenic fungi
J Sperschneider, PN Dodds, DM Gardiner, JM Manners, KB Singh, ...
PLoS pathogens 11 (5), e1004806, 2015
1892015
Genome Sequencing and Comparative Genomics of the Broad Host-Range Pathogen Rhizoctonia solani AG8
JK Hane, JP Anderson, AH Williams, J Sperschneider, KB Singh
PLoS genetics 10 (5), e1004281, 2014
1792014
ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning
J Sperschneider, PN Dodds, KB Singh, JM Taylor
New Phytologist 217 (4), 1764-1778, 2018
1622018
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation
F Li, NM Upadhyaya, J Sperschneider, O Matny, H Nguyen-Phuc, R Mago, ...
Nature communications 10 (1), 5068, 2019
1332019
Comparative genomics and prediction of conditionally dispensable sequences in legume–infecting Fusarium oxysporum formae speciales facilitates identification …
AH Williams, M Sharma, LF Thatcher, S Azam, JK Hane, J Sperschneider, ...
BMC genomics 17, 1-24, 2016
1142016
DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model
J Sperschneider, A Datta
Nucleic acids research 38 (7), e103-e103, 2010
1012010
A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity
B Schwessinger, J Sperschneider, WS Cuddy, DP Garnica, ME Miller, ...
MBio 9 (1), 10.1128/mbio. 02275-17, 2018
1002018
Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity
J Sperschneider, DM Gardiner, LF Thatcher, R Lyons, KB Singh, ...
Genome biology and evolution 7 (6), 1613-1627, 2015
902015
Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes
NM Upadhyaya, DP Garnica, H Karaoglu, J Sperschneider, A Nemri, B Xu, ...
Frontiers in plant science 5, 102727, 2015
842015
Evaluation of secretion prediction highlights differing approaches needed for oomycete and fungal effectors
J Sperschneider, AH Williams, JK Hane, KB Singh, JM Taylor
Frontiers in plant science 6, 153406, 2015
712015
Genomics accelerated isolation of a new stem rust avirulence gene–wheat resistance gene pair
NM Upadhyaya, R Mago, V Panwar, T Hewitt, M Luo, J Chen, ...
Nature Plants 7 (9), 1220-1228, 2021
702021
Machine learning in plant–pathogen interactions: empowering biological predictions from field scale to genome scale
J Sperschneider
New Phytologist 228 (1), 35-41, 2020
652020
Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors
JP Anderson, J Sperschneider, J Win, B Kidd, K Yoshida, J Hane, ...
Scientific reports 7 (1), 10410, 2017
652017
Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors
J Sperschneider, H Ying, PN Dodds, DM Gardiner, NM Upadhyaya, ...
Frontiers in plant science 5, 372, 2014
572014
De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust
ME Miller, Y Zhang, V Omidvar, J Sperschneider, B Schwessinger, ...
MBio 9 (1), 10.1128/mbio. 01650-17, 2018
552018
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