Matthew Brandley
Matthew Brandley
Technical officer
Verified email at dpi.nsw.gov.au - Homepage
TitleCited byYear
Partitioned Bayesian analyses, partition choice, and the phylogenetic relationships of scincid lizards
MC Brandley, A Schmitz, TW Reeder
Systematic biology 54 (3), 373-390, 2005
7412005
Why does a trait evolve multiple times within a clade? Repeated evolution of snake-like body form in squamate reptiles
JJ Wiens, MC Brandley, TW Reeder
Evolution 60 (1), 123-141, 2006
3032006
Rates and patterns in the evolution of snake-like body form in squamate reptiles: evidence for repeated re-evolution of lost digits and long-term persistence of intermediate …
MC Brandley, JP Huelsenbeck, JJ Wiens
Evolution 62 (8), 2042-2064, 2008
1642008
Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards
MC Brandley, Y Wang, X Guo, AN Montes de Oca, M Feria-Ortiz, T Hikida, ...
Systematic Biology 60 (1), 3-15, 2010
1302010
Seven new dolphin mitochondrial genomes and a time-calibrated phylogeny of whales
Y Xiong, MC Brandley, S Xu, K Zhou, G Yang
BMC Evolutionary Biology 9 (1), 20, 2009
1082009
Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea)
A Dornburg, MC Brandley, MR McGowen, TJ Near
Molecular Biology and Evolution 29 (2), 721-736, 2011
892011
Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation
FT Burbrink, X Chen, EA Myers, MC Brandley, RA Pyron
Proceedings of the Royal Society B: Biological Sciences 279 (1748), 4817-4826, 2012
732012
Opening the black box: phylogenetics and morphological evolution of the Malagasy fossorial lizards of the subfamily “Scincinae”
A Schmitz, MC Brandley, P Mausfeld, M Vences, F Glaw, RA Nussbaum, ...
Molecular Phylogenetics and Evolution 34 (1), 118-133, 2005
662005
Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards
MC Brandley, JG Bragg, S Singhal, DG Chapple, CK Jennings, ...
BMC Evolutionary Biology 15 (1), 62, 2015
522015
Ancestral state reconstructions require biological evidence to test evolutionary hypotheses: a case study examining the evolution of reproductive mode in squamate reptiles
OW Griffith, DG Blackburn, MC Brandley, JU Van Dyke, CM Whittington, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2015
522015
A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution
K He, YJ Li, MC Brandley, LK Lin, YX Wang, YP Zhang, XL Jiang
Molecular Phylogenetics and Evolution 56 (2), 734-746, 2010
512010
Uterine gene expression in the live-bearing lizard, Chalcides ocellatus, reveals convergence of squamate and mammalian pregnancy mechanisms
MC Brandley, RL Young, DL Warren, MB Thompson, GP Wagner
Genome Biology and Evolution, 2012
502012
The evolution of viviparity: molecular and genomic data from squamate reptiles advance understanding of live birth in amniotes
JU Van Dyke, MC Brandley, MB Thompson
Reproduction 147 (1), R15-R26, 2014
472014
Phylogeny, ecomorphological evolution, and historical biogeography of the Anolis cristatellus series
MC Brandley, K De Queiroz
Herpetological Monographs 18 (1), 2004
472004
The phylogenetic systematics of blue-tailed skinks (Plestiodon) and the family Scincidae
MC Brandley, H OTA, T Hikida, A Nieto Montes De Oca, M Feria-Ortiz, ...
Zoological Journal of the Linnean Society 165 (1), 163-189, 2012
462012
Convergence in trophic morphology and feeding performance among piscivorous natricine snakes
SE Vincent, MC Brandley, A Herrel, ME Alfaro
Journal of evolutionary biology 22 (6), 1203-1211, 2009
452009
Data and data interpretation in the study of limb evolution: a reply to Galis et al. on the reevolution of digits in the lizard genus Bachia
T Kohlsdorf, VJ Lynch, MT Rodrigues, MC Brandley, GP Wagner
Evolution: International Journal of Organic Evolution 64 (8), 2477-2485, 2010
422010
Which came first: the lizard or the egg? Robustness in phylogenetic reconstruction of ancestral states
AM Wright, KM Lyons, MC Brandley, DM Hillis
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2015
382015
Are unequal clade priors problematic for Bayesian phylogenetics?
MC Brandley, AD Leaché, DL Warren, JA McGuire
Systematic biology 55 (1), 138-146, 2006
342006
Boom and bust: ancient and recent diversification in bichirs (polypteridae: actinopterygii), a relictual lineage of ray‐finned fishes
TJ Near, A Dornburg, M Tokita, D Suzuki, MC Brandley, M Friedman
Evolution 68 (4), 1014-1026, 2014
302014
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