Maxwell W Libbrecht
Maxwell W Libbrecht
Assistant Professor, Computing Science, Simon Fraser University
Verified email at - Homepage
Cited by
Cited by
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
Machine learning applications in genetics and genomics
MW Libbrecht, WS Noble
Nature Reviews Genetics, 2015
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic acids research 41 (2), 827-841, 2013
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
A Kundaje, S Kyriazopoulou-Panagiotopoulou, M Libbrecht, CL Smith, ...
Genome research 22 (9), 1735-1747, 2012
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
MW Libbrecht, F Ay, MM Hoffman, DM Gilbert, JA Bilmes, WS Noble
Genome Research 25, 544-557, 2015
PREDICTD parallel epigenomics data imputation with cloud-based tensor decomposition
TJ Durham, MW Libbrecht, JJ Howbert, J Bilmes, WS Noble
Nature communications 9 (1), 1-15, 2018
Nucleotide sequence and DNaseI sensitivity are predictive of 3D chromatin architecture
J Schreiber, M Libbrecht, J Bilmes, WS Noble
bioRxiv, 103614, 2017
Distinct epigenetic features of differentiation-regulated replication origins
OK Smith, RG Kim, H Fu, MM Martin, CM Lin, K Utani, Y Zhang, AB Marks, ...
Epigenetics & chromatin 9 (1), 1-17, 2016
A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types
MW Libbrecht, OL Rodriguez, Z Weng, JA Bilmes, MM Hoffman, ...
Genome biology 20 (1), 1-14, 2019
Segway 2.0: Gaussian mixture models and minibatch training
RCW Chan, MW Libbrecht, EG Roberts, JA Bilmes, WS Noble, ...
Bioinformatics 34 (4), 669-671, 2018
Interferometric measurement of the resonant absorption and refractive index in rubidium gas
KG Libbrecht, MW Libbrecht
American journal of physics 74 (12), 1055-1060, 2006
Choosing non‐redundant representative subsets of protein sequence data sets using submodular optimization
MW Libbrecht, JA Bilmes, WS Noble
Proteins: Structure, Function, and Bioinformatics 86 (4), 454-466, 2018
Choosing panels of genomics assays using submodular optimization
K Wei, MW Libbrecht, JA Bilmes, WS Noble
Genome biology 17 (1), 1-15, 2016
Entropic graph-based posterior regularization
M Libbrecht, M Hoffman, J Bilmes, W Noble
International Conference on Machine Learning, 1992-2001, 2015
VSS: variance-stabilized signals for sequencing-based genomic signals
F Bayat, M Libbrecht
Bioinformatics 37 (23), 4383-4391, 2021
An interpretable classification method for predicting drug resistance in M. tuberculosis
H Zabeti, N Dexter, AH Safari, N Sedaghat, M Libbrecht, L Chindelevitch
20th International Workshop on Algorithms in Bioinformatics (WABI 2020), 2020
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis
H Zabeti, N Dexter, AH Safari, N Sedaghat, M Libbrecht, L Chindelevitch
bioRxiv, 2020.05. 31.115741, 2021
Continuous chromatin state feature annotation of the human epigenome
B Chen, NS Kenari, MW Libbrecht
bioRxiv, 473017, 2018
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