Rob Beiko
Rob Beiko
Associate Professor of Computer Science, Dalhousie University
Verified email at dal.ca - Homepage
Title
Cited by
Cited by
Year
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...
Nature biotechnology 31 (9), 814-821, 2013
45102013
STAMP: statistical analysis of taxonomic and functional profiles
DH Parks, GW Tyson, P Hugenholtz, RG Beiko
Bioinformatics 30 (21), 3123-3124, 2014
15022014
Identifying biologically relevant differences between metagenomic communities
DH Parks, RG Beiko
Bioinformatics 26 (6), 715-721, 2010
7402010
Highways of gene sharing in prokaryotes
RG Beiko, TJ Harlow, MA Ragan
Proceedings of the National Academy of Sciences 102 (40), 14332-14337, 2005
5312005
A phylogenomic view of ecological specialization in the Lachnospiraceae, a family of digestive tract-associated bacteria
CJ Meehan, RG Beiko
Genome biology and evolution 6 (3), 703-713, 2014
3672014
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
BA Curtis, G Tanifuji, F Burki, A Gruber, M Irimia, S Maruyama, MC Arias, ...
Nature 492 (7427), 59-65, 2012
3242012
Prokaryotic evolution and the tree of life are two different things
E Bapteste, MA O'Malley, RG Beiko, M Ereshefsky, JP Gogarten, ...
Biology direct 4 (1), 34, 2009
2452009
Microbial shifts in the aging mouse gut
MGI Langille, CJ Meehan, JE Koenig, AS Dhanani, RA Rose, SE Howlett, ...
Microbiome 2 (1), 50, 2014
1852014
Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation
M Lommer, M Specht, AS Roy, L Kraemer, R Andreson, MA Gutowska, ...
Genome biology 13 (7), 1-21, 2012
1802012
Phylogenetic identification of lateral genetic transfer events
RG Beiko, N Hamilton
BMC evolutionary biology 6 (1), 15, 2006
1782006
Interactions in the microbiome: communities of organisms and communities of genes
E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko
FEMS microbiology reviews 38 (1), 90-118, 2014
1562014
Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
GDP Clarke, RG Beiko, MA Ragan, RL Charlebois
Journal of bacteriology 184 (8), 2072-2080, 2002
1562002
GenGIS: A geospatial information system for genomic data
DH Parks, M Porter, S Churcher, S Wang, C Blouin, J Whalley, S Brooks, ...
Genome research 19 (10), 1896-1904, 2009
1272009
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
BP Alcock, AR Raphenya, TTY Lau, KK Tsang, M Bouchard, ...
Nucleic acids research 48 (D1), D517-D525, 2020
1062020
GenGIS 2: Geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework
DH Parks, T Mankowski, S Zangooei, MS Porter, DG Armanini, DJ Baird, ...
PloS one 8 (7), e69885, 2013
1012013
Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community
LA Hug, RG Beiko, AR Rowe, RE Richardson, EA Edwards
BMC genomics 13 (1), 327, 2012
992012
Do different surrogate methods detect lateral genetic transfer events of different relative ages?
MA Ragan, TJ Harlow, RG Beiko
Trends in microbiology 14 (1), 4-8, 2006
972006
Ephemeroptera, Plecoptera, and Trichoptera fauna of Churchill (Manitoba, Canada): insights into biodiversity patterns from DNA barcoding
X Zhou, LM Jacobus, RE DeWalt, SJ Adamowicz, PDN Hebert
Journal of the North American Benthological Society 29 (3), 814-837, 2010
942010
Lateral genetic transfer: open issues
MA Ragan, RG Beiko
Philosophical Transactions of the Royal Society B: Biological Sciences 364 …, 2009
922009
Virulence Profiling of Streptococcus dysgalactiae Subspecies equisimilis Isolated from Infected Humans Reveals 2 Distinct Genetic Lineages That Do Not …
MR Davies, DJ McMillan, RG Beiko, V Barroso, R Geffers, KS Sriprakash, ...
Clinical infectious diseases 44 (11), 1442-1454, 2007
822007
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Articles 1–20