Ricardo Roberto da Silva
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
22352019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
12892016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
5572018
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 2018
2442018
Illuminating the dark matter in metabolomics
RR Silva, PC Dorrestein, RA Quinn
Proceedings of the National Academy of Sciences of the United States of America, 2015
2142015
Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing
M Ernst, DB Silva, RR Silva, RZN Vêncio, NP Lopes
Natural product reports 31 (6), 784-806, 2014
1622014
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation
LF Nothias, M Nothias-Esposito, R da Silva, M Wang, I Protsyuk, Z Zhang, ...
J. Nat. Prod., 2018
1142018
Global chemical analysis of biology by mass spectrometry
AA Aksenov, R da Silva, R Knight, NP Lopes, PC Dorrestein
Nature Reviews Chemistry 1 (7), 1-20, 2017
942017
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature Methods 17 (9), 905-908, 2020
922020
Propagating annotations of molecular networks using in silico fragmentation
RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ...
PLoS Comput Biol, 2018
922018
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols
M Crüsemann, EC O’Neill, CB Larson, AV Melnik, DJ Floros, RR da Silva, ...
Journal of Natural Products, 2016
772016
Global chemical effects of the microbiome include new bile-acid conjugations
RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ...
Nature 579 (7797), 123-129, 2020
622020
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung
Cell Host & Microbe, 2017
612017
ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics
S Ricardo R., F Jourdan, DM Salvanha, F Letisse, EL Jamin, ...
Bioinformatics, 2014
512014
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical Chemistry, 2017
472017
Queen signals in a stingless bee: suppression of worker ovary activation and spatial distribution of active compounds
TM Nunes, S Mateus, AP Favaris, MFZJ Amaral, LG Von Zuben, ...
Scientific reports 4 (1), 1-7, 2014
472014
High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter
D Petras, I Koester, R Da Silva, BM Stephens, AF Haas, CE Nelson, ...
Frontiers in Marine Science 4, 405, 2017
442017
QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science
E Boylen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints 6, e27295v2, 2018
422018
Lifestyle chemistries from phones for individual profiling
A Bouslimania, AV Melnik, Z Xu, A Amir, RR da Silva, M Wang, ...
Proceedings of the National Academy of Sciences, 2016
422016
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
412020
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