William DeWitt
William DeWitt
McDonnell Foundation Fellow, UC Berkeley, EECS
Verified email at - Homepage
Cited by
Cited by
A single-cell atlas of in vivo mammalian chromatin accessibility
DA Cusanovich, AJ Hill, D Aghamirzaie, RM Daza, HA Pliner, JB Berletch, ...
Cell 174 (5), 1309-1324. e18, 2018
Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
RO Emerson, WS DeWitt, M Vignali, J Gravley, JK Hu, EJ Osborne, ...
Nature genetics 49 (5), 659-665, 2017
Dynamics of the cytotoxic T cell response to a model of acute viral infection
WS DeWitt, RO Emerson, P Lindau, M Vignali, TM Snyder, C Desmarais, ...
Journal of virology 89 (8), 4517-4526, 2015
A public database of memory and naive B-cell receptor sequences
WS DeWitt, P Lindau, TM Snyder, AM Sherwood, M Vignali, CS Carlson, ...
PloS one 11 (8), e0160853, 2016
Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity
W DeWitt, A Smith, G Schoch, J Hansen, F Matsen, P Bradley
eLife, 2018
Deep generative models for T cell receptor protein sequences.
K Davidsen, BJ Olson, WS DeWitt, J Feng, E Harkins, P Bradley, ...
Using genotype abundance to improve phylogenetic inference
WS DeWitt III, L Mesin, GD Victora, VN Minin, FA Matsen IV
Molecular biology and evolution 35 (5), 1253-1265, 2018
Nonlinear behaviors of contrast agents relevant to diagnostic and therapeutic applications
J Wu, J Pepe, W Dewitt III
Ultrasound in medicine & biology 29 (4), 555-562, 2003
Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19
Z Montague, H Lv, J Otwinowski, WS DeWitt, G Isacchini, GK Yip, WW Ng, ...
Cell Reports 35 (8), 109173, 2021
A diverse lipid antigen–specific TCR repertoire is clonally expanded during active tuberculosis
WS DeWitt, KQ Krystle, DB Wilburn, A Sherwood, M Vignali, CL Day, ...
The Journal of Immunology 201 (3), 888-896, 2018
Nonparametric coalescent inference of mutation spectrum history and demography
WS DeWitt, KD Harris, AP Ragsdale, K Harris
Proceedings of the National Academy of Sciences 118 (21), e2013798118, 2021
Multiplexed digital quantitation of rearranged lymphoid receptors in a complex mixture
WS Dewitt, RO Emerson, HS Robins, AM Sherwood
US Patent 10,246,701, 2019
Methods for diagnosing infectious disease and determining HLA status using immune repertoire sequencing
RO Emerson, HS Robins, M Rieder, W Dewitt III, C Carlson
US Patent 11,047,008, 2021
Estimation of cell lineage trees by maximum-likelihood phylogenetics
J Feng, WS DeWitt III, A McKenna, N Simon, AD Willis, FA Matsen IV
The Annals of Applied Statistics 15 (1), 343-362, 2021
Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation
J Carlson, WS DeWitt, K Harris
Current opinion in genetics & development 62, 50-57, 2020
Replicate immunosequencing as a robust probe of B cell repertoire diversity
W DeWitt, P Lindau, T Snyder, M Vignali, R Emerson, H Robins
arXiv preprint arXiv:1410.0350, 2014
Robustness of phylogenetic inference to model misspecification caused by pairwise epistasis
AF Magee, SK Hilton, WS DeWitt
Molecular biology and evolution 38 (10), 4603-4615, 2021
Characterization of adaptive immune response to vaccination or infection using immune repertoire sequencing
HS Robins, WS DeWitt III, RO Emerson
US Patent 11,066,705, 2021
mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra
WS DeWitt
bioRxiv, 2020
Mutational analysis of circulating tumor cells in breast cancer patients by targeted clonal sequencing.
X Xu, Y Shen, W Dewitt, D Pandya, FZ Bischoff, KD Crew, DL Hershman, ...
Journal of Clinical Oncology 30 (15_suppl), 10516-10516, 2012
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