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Rute R da Fonseca
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Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
19342014
Comparative genomics reveals insights into avian genome evolution and adaptation
G Zhang, C Li, Q Li, B Li, DM Larkin, C Lee, JF Storz, A Antunes, ...
Science 346 (6215), 1311-1320, 2014
10572014
Patterns of positive selection in six mammalian genomes
C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz, CD Bustamante, R Nielsen, ...
PLoS genetics 4 (8), e1000144, 2008
6292008
The adaptive evolution of the mammalian mitochondrial genome
RR Da Fonseca, WE Johnson, SJ O'Brien, MJ Ramos, A Antunes
BMC genomics 9, 1-22, 2008
4232008
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
L Chen, Q Qiu, YU Jiang, K Wang, Z Lin, Z Li, F Bibi, Y Yang, J Wang, ...
Science 364 (6446), eaav6202, 2019
3212019
Dense sampling of bird diversity increases power of comparative genomics
S Feng, J Stiller, Y Deng, J Armstrong, QI Fang, AH Reeve, D Xie, G Chen, ...
Nature 587 (7833), 252-257, 2020
3152020
Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins
E Cappellini, LJ Jensen, D Szklarczyk, A Ginolhac, RAR da Fonseca, ...
Journal of proteome research 11 (2), 917-926, 2012
2432012
Next-generation biology: sequencing and data analysis approaches for non-model organisms
RR da Fonseca, A Albrechtsen, GE Themudo, J Ramos-Madrigal, ...
Marine genomics 30, 3-13, 2016
1982016
The origin and evolution of maize in the Southwestern United States
RR Da Fonseca, BD Smith, N Wales, E Cappellini, P Skoglund, ...
Nature plants 1 (1), 1-5, 2015
1782015
Ancient genomics
C Der Sarkissian, ME Allentoft, MC Ávila-Arcos, R Barnett, PF Campos, ...
Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015
1582015
Cephalopods in neuroscience: regulations, research and the 3Rs
G Fiorito, A Affuso, DB Anderson, J Basil, L Bonnaud, G Botta, A Cole, ...
Invertebrate Neuroscience 14, 13-36, 2014
1582014
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ...
Science 358 (6365), 951-954, 2017
1332017
Positive selection on the killer whale mitogenome
AD Foote, PA Morin, JW Durban, RL Pitman, P Wade, E Willerslev, ...
Biology letters 7 (1), 116-118, 2011
1312011
Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution
E Willerslev, MTP Gilbert, J Binladen, SYW Ho, PF Campos, A Ratan, ...
BMC evolutionary biology 9, 1-11, 2009
1312009
Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution
AR Tanner, D Fuchs, IE Winkelmann, MTP Gilbert, MS Pankey, ...
Proceedings of the Royal Society B: Biological Sciences 284 (1850), 20162818, 2017
1242017
The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression
J Melo-Ferreira, J Vilela, MM Fonseca, RR da Fonseca, P Boursot, ...
Genome biology and evolution 6 (4), 886-896, 2014
1012014
Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases
RR da Fonseca, WE Johnson, SJ O'Brien, V Vasconcelos, A Antunes
BMC evolutionary biology 10, 1-11, 2010
942010
Phylogenomic analyses data of the avian phylogenomics project
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
GigaScience 4 (1), s13742-014-0038-1, 2015
892015
Comparative genomics provides insights into the aquatic adaptations of mammals
Y Yuan, Y Zhang, P Zhang, C Liu, J Wang, H Gao, AR Hoelzel, I Seim, ...
Proceedings of the National Academy of Sciences 118 (37), e2106080118, 2021
722021
Cephalopod genomics: a plan of strategies and organization
CB Albertin, L Bonnaud, CT Brown, WJ Crookes-Goodson, ...
Standards in genomic sciences 7, 175-188, 2012
652012
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