Soroush Safaei

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Peter HunterDirector, Auckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Pablo Javier BlancoNational Laboratory for Scientific ComputingVerified email at lncc.br
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Gonzalo D. Maso TalouSenior research fellow, Auckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Vinod SureshAuckland Bioengineering Institute and Department of Engineering ScienceVerified email at auckland.ac.nz
J. Geoffrey ChaseProfessor Mechanical Engineering, University of CanterburyVerified email at canterbury.ac.nz
Lucas MuellerAssociate Professor, Department of Mathematics, University of Trento, ItalyVerified email at unitn.it
Harvey HoAuckland Bioengineering Institute, The University of AucklandVerified email at auckland.ac.nz
Jennifer L. Knopp (Dickson)Post Doctoral Research Fellow, University of Canterbury, New ZealandVerified email at canterbury.ac.nz
Geoff ShawUniversity of OtagoVerified email at cdhb.health.nz
Christopher PrettyUniversity of CanterburyVerified email at canterbury.ac.nz
Merryn TawhaiProfessor of Bioengineering, Auckland Bioengineering Institute, University of AucklandVerified email at aucklanduni.ac.nz
Leif Rune HellevikProfessor in biomechanics, NTNU, Trondheim, NorwayVerified email at ntnu.no
Chris BradleyAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Renfei MaLecturer at Shenzhen MSU-BIT UniversityVerified email at aucklanduni.ac.nz
Bartlett AdamUniversity of AucklandVerified email at adhb.govt.nz
Kumar MithraratneSenior Research Fellow/Principal Investigator, Auckland Bioengineering Institute, University of Auckland, New ZealandVerified email at auckland.ac.nz
Stig W. OmholtResearch professor at the Norwegian University of Science and Technology (NTNU)Verified email at ntnu.no
Jagir R. HussanAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Natallia KokashUniversity of AmsterdamVerified email at uva.nl

Soroush Safaei

Senior Research Fellow, Auckland Bioengineering Institute, University of Auckland

Verified email at auckland.ac.nz - Homepage

Computational Physiology


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Next-generation, personalised, model-based critical care medicine: a state-of-the art review of in silico virtual patient models, methods, and cohorts, and how to validation them JG Chase, JC Preiser, JL Dickson, A Pironet, YS Chiew, CG Pretty, ... Biomedical engineering online 17, 1-29, 2018	192	2018
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project C Bradley, A Bowery, R Britten, V Budelmann, O Camara, R Christie, ... Progress in biophysics and molecular biology 107 (1), 32-47, 2011	152	2011
Bond Graph Model of Cerebral Circulation: Towards Clinically Feasible Systemic Blood Flow Simulations S Safaei, PJ Blanco, LO Muller, LR Hellevik, P Hunter Frontiers in Physiology 9, 148, 2018	39	2018
Roadmap for cardiovascular circulation model S Safaei, CP Bradley, V Suresh, K Mithraratne, A Muller, H Ho, D Ladd, ... The Journal of physiology 594 (23), 6909-6928, 2016	37	2016
Large expert-curated database for benchmarking document similarity detection in biomedical literature search P Brown, AC Tan, MA El-Esawi, T Liehr, O Blanck, DP Gladue, ... Database 2019, 2019	34	2019
Adaptive constrained constructive optimisation for complex vascularisation processes GDM Talou, S Safaei, PJ Hunter, PJ Blanco Scientific Reports 11 (1), 6180, 2021	27	2021
Using CellML with OpenCMISS to simulate multi-scale physiology DP Nickerson, D Ladd, JR Hussan, S Safaei, V Suresh, PJ Hunter, ... Frontiers in bioengineering and biotechnology 2, 79, 2015	26	2015
Anatomically based simulation of hepatic perfusion in the human liver R Ma, P Hunter, W Cousins, H Ho, A Bartlett, S Safaei International journal for numerical methods in biomedical engineering 35 (9 …, 2019	20	2019
The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units B De Bono, S Safaei, P Grenon, DP Nickerson, S Alexander, ... Frontiers in physiology 6, 125952, 2015	18	2015
Meeting the multiscale challenge: representing physiology processes over ApiNATOMY circuits using bond graphs B De Bono, S Safaei, P Grenon, P Hunter Interface focus 8 (1), 20170026, 2018	17	2018
Hierarchical semantic composition of biosimulation models using bond graphs N Shahidi, M Pan, S Safaei, K Tran, EJ Crampin, DP Nickerson PLoS computational biology 17 (5), e1008859, 2021	12	2021
Computational modeling of glucose uptake in the enterocyte N Afshar, S Safaei, DP Nickerson, PJ Hunter, V Suresh Frontiers in physiology 10, 442803, 2019	11	2019
Modeling the hepatic arterial flow in living liver donor after left hepatectomy and postoperative boundary condition exploration R Ma, P Hunter, W Cousins, H Ho, A Bartlett, S Safaei International Journal for Numerical Methods in Biomedical Engineering 36 (3 …, 2020	10	2020
Simulating blood flow in an anatomical arterial network S Safaei PhD Thesis-University of Auckland, 2015	9	2015
Computational fluid dynamic modeling of the lymphatic system: a review of existing models and future directions TD Jayathungage Don, S Safaei, GD Maso Talou, PS Russell, ... Biomechanics and Modeling in Mechanobiology 23 (1), 3-22, 2024	5	2024
Computational modelling of glucose uptake by sglt1 and apical glut2 in the enterocyte N Afshar, S Safaei, DP Nickerson, PJ Hunter, V Suresh Frontiers in physiology 12, 699152, 2021	5	2021
Computational models for generating microvascular structures: Investigations beyond medical imaging resolution C Apeldoorn, S Safaei, J Paton, GD Maso Talou WIREs Mechanisms of Disease 15 (1), e1579, 2023	4	2023
In silico modeling for the hepatic circulation and transport: From the liver organ to lobules H Ho, S Means, S Safaei, PJ Hunter WIREs Mechanisms of Disease 15 (2), e1586, 2023	3	2023
From fetus to neonate: A review of cardiovascular modeling in early life RW May, GD Maso Talou, AR Clark, JP Mynard, JJ Smolich, PJ Blanco, ... WIREs Mechanisms of Disease 15 (4), e1608, 2023	1	2023
A modular and reusable model of epithelial transport in the proximal convoluted tubule L Noroozbabaee, PJ Blanco, S Safaei, DP Nickerson Plos one 17 (11), e0275837, 2022	1	2022

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