| InterProScan–an integration platform for the signature-recognition methods in InterPro EM Zdobnov, R Apweiler Bioinformatics 17 (9), 847, 2001 | 2788 | 2001 |
| The PROSITE database, its status in 1999 K Hofmann, P Bucher, L Falquet, A Bairoch Nucleic Acids Research 27 (1), 215-219, 1999 | 1375 | 1999 |
| Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences P Bucher Journal of molecular biology 212 (4), 563-578, 1990 | 1372 | 1990 |
| ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins E De Castro, CJA Sigrist, A Gattiker, V Bulliard, PS Langendijk-Genevaux, ... Nucleic acids research 34 (suppl_2), W362-W365, 2006 | 1339 | 2006 |
| The PROSITE database, its status in 2002 L Falquet, M Pagni, P Bucher, N Hulo, CJA Sigrist, K Hofmann, A Bairoch Nucleic acids research 30 (1), 235-238, 2002 | 1261 | 2002 |
| The InterPro database, an integrated documentation resource for protein families, domains and functional sites R Apweiler, TK Attwood, A Bairoch, A Bateman, E Birney, M Biswas, ... Nucleic acids research 29 (1), 37-40, 2001 | 1146 | 2001 |
| ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences C Iseli, CV Jongeneel, P Bucher Proc Int Conf Intell Syst Mol Biol 7, 138-148, 1999 | 1143 | 1999 |
| The PROSITE database, its status in 1997 A Bairoch, P Bucher, K Hofmann Nucleic Acids Research 25 (1), 217, 1997 | 1040 | 1997 |
| PROSITE: a documented database using patterns and profiles as motif descriptors CJA Sigrist, L Cerutti, N Hulo, A Gattiker, L Falquet, M Pagni, A Bairoch, ... Briefings in bioinformatics 3 (3), 265-274, 2002 | 986 | 2002 |
| The PROSITE database N Hulo, A Bairoch, V Bulliard, L Cerutti, E De Castro, ... Nucleic acids research 34 (suppl_1), D227-D230, 2006 | 974 | 2006 |
| A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins P Bork, K Hofmann, P Bucher, AF Neuwald, SF Altschul, EV Koonin The FASEB journal 11 (1), 68, 1997 | 924 | 1997 |
| PROSITE, a protein domain database for functional characterization and annotation CJA Sigrist, L Cerutti, E De Castro, PS Langendijk-Genevaux, V Bulliard, ... Nucleic acids research 38 (suppl_1), D161-D166, 2010 | 875 | 2010 |
| The InterPro Database, 2003 brings increased coverage and new features NJ Mulder, R Apweiler, TK Attwood, A Bairoch, D Barrell, A Bateman, ... Nucleic acids research 31 (1), 315-318, 2003 | 848 | 2003 |
| InterPro, progress and status in 2005 NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, ... Nucleic acids research 33 (suppl_1), D201-D205, 2005 | 712 | 2005 |
| The CARD domain: a new apoptotic signalling motif. K Hofmann, P Bucher, J Tschopp Trends in biochemical sciences 22 (5), 155, 1997 | 661 | 1997 |
| New developments in the InterPro database NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, ... Nucleic acids research 35 (suppl_1), D224-D228, 2007 | 583 | 2007 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 547 | 2013 |
| Recent improvements to the PROSITE database N Hulo, CJA Sigrist, V Le Saux, PS Langendijk‐Genevaux, L Bordoli, ... Nucleic Acids Research 32 (suppl_1), D134-D137, 2004 | 522 | 2004 |
| The UBA domain: a sequence motif present in multiple enzyme classes of the ubiquitination pathway. K Hofmann, P Bucher Trends in biochemical sciences 21 (5), 172, 1996 | 491 | 1996 |
| Methods and algorithms for statistical analysis of protein sequences V Brendel, P Bucher, IR Nourbakhsh, BE Blaisdell, S Karlin Proceedings of the National Academy of Sciences 89 (6), 2002, 1992 | 461 | 1992 |
