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Asif U Tamuri
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Genome sequencing of normal cells reveals developmental lineages and mutational processes
S Behjati, M Huch, R van Boxtel, W Karthaus, DC Wedge, AU Tamuri, ...
Nature, 10.1038/nature13448, 2014
3262014
Transcriptional diversity during lineage commitment of human blood progenitors
L Chen, M Kostadima, JHA Martens, G Canu, SP Garcia, E Turro, ...
Science 345 (6204), 1251033, 2014
2822014
Identifying changes in selective constraints: host shifts in influenza
AU Tamuri, M dos Reis, AJ Hay, RA Goldstein
PLoS Computational Biology 5 (11), e1000564, 2009
1222009
Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models
AU Tamuri, M dos Reis, RA Goldstein
Genetics 190 (3), 1101-1115, 2012
1112012
SMIM1 underlies the Vel blood group and influences red blood cell traits
A Cvejic, L Haer-Wigman, JC Stephens, M Kostadima, PA Smethurst, ...
Nature Genetics, 2013
1092013
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination
J Cudini, S Roy, CJ Houldcroft, JM Bryant, DP Depledge, H Tutill, P Veys, ...
Proceedings of the National Academy of Sciences 116 (12), 5693-5698, 2019
1082019
PCR master mixes harbour murine DNA sequences. Caveat emptor!
PW Tuke, KI Tettmar, AU Tamuri, JP Stoye, RS Tedder
PLoS ONE 6 (5), e19953, 2011
592011
A Penalized Likelihood Method for Estimating the Distribution of Selection Coefficients from Phylogenetic Data
AU Tamuri, N Goldman, M dos Reis
Genetics 197 (5), 257-271, 2014
552014
Alignment modulates ancestral sequence reconstruction accuracy
RA Vialle, AU Tamuri, N Goldman
Molecular biology and evolution 35 (7), 1783-1797, 2018
442018
Charting the host adaptation of influenza viruses
M dos Reis, AU Tamuri, AJ Hay, RA Goldstein
Molecular biology and evolution 28 (6), 1755, 2011
362011
Rapid morphological evolution in placental mammals post-dates the origin of the crown group
TJD Halliday, M Dos Reis, AU Tamuri, H Ferguson-Gow, Z Yang, ...
Proceedings of the Royal Society B 286 (1898), 20182418, 2019
292019
ArchSchema: a tool for interactive graphing of related Pfam domain architectures
AU Tamuri, RA Laskowski
Bioinformatics 26 (9), 1260-1261, 2010
272010
Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data
O Stirrup, J Hughes, M Parker, DG Partridge, JG Shepherd, J Blackstone, ...
Elife 10, e65828, 2021
232021
A species-level timeline of mammal evolution integrating phylogenomic data
S Álvarez-Carretero, AU Tamuri, M Battini, FF Nascimento, E Carlisle, ...
Nature 602 (7896), 263-267, 2022
142022
Haplotype assignment of virus NGS data using co-variation of variant frequencies
RA Goldstein, AU Tamuri, S Roy, J Breuer
BioRxiv, 444877, 2018
11*2018
ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments
RF Schwarz, AU Tamuri, M Kultys, J King, J Godwin, AM Florescu, ...
Nucleic Acids Research 44 (8), e77-e77, 2016
102016
Treesub: annotating ancestral substitutions on a tree
AU Tamuri
https://github.com/tamuri/treesub, 2013
72013
Avoiding ascertainment bias in the maximum likelihood inference of phylogenies based on truncated data
AU Tamuri, N Goldman
bioRxiv, 186478, 2017
42017
A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection
AU Tamuri, M Dos Reis
Molecular Biology and Evolution 39 (1), msab309, 2022
22022
Evaluating the effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control teams: the COG-UK hospital-onset COVID-19 infection study
O Stirrup, J Blackstone, F Mapp, A MacNeil, M Panca, A Holmes, ...
medRxiv, 2022
12022
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