| Spatial reconstruction of single-cell gene expression data R Satija, JA Farrell, D Gennert, AF Schier, A Regev Nature biotechnology 33 (5), 495-502, 2015 | 4560 | 2015 |
| Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis JA Farrell, Y Wang, SJ Riesenfeld, K Shekhar, A Regev, AF Schier Science 360 (6392), eaar3131, 2018 | 685 | 2018 |
| Stem cell differentiation trajectories in Hydra resolved at single-cell resolution S Siebert, JA Farrell, JF Cazet, Y Abeykoon, AS Primack, CE Schnitzler, ... Science 365 (6451), eaav9314, 2019 | 289 | 2019 |
| From Egg to Gastrula: How the Cell Cycle Is Remodeled During the Drosophila Mid-Blastula Transition JA Farrell, PH O'Farrell Annual review of genetics 48, 269-294, 2014 | 202 | 2014 |
| Response to Nodal morphogen gradient is determined by the kinetics of target gene induction J Dubrulle, BM Jordan, L Akhmetova, JA Farrell, SH Kim, L Solnica-Krezel, ... Elife 4, e05042, 2015 | 92 | 2015 |
| Mechanism and regulation of Cdc25/Twine protein destruction in embryonic cell-cycle remodeling JA Farrell, PH O’Farrell Current Biology 23 (2), 118-126, 2013 | 81 | 2013 |
| Embryonic onset of late replication requires Cdc25 down-regulation JA Farrell, AW Shermoen, K Yuan, PH O'Farrell Genes & development 26 (7), 714-725, 2012 | 76 | 2012 |
| Emergence of neuronal diversity during vertebrate brain development B Raj, JA Farrell, J Liu, J El Kholtei, AN Carte, JN Acedo, LY Du, ... Neuron 108 (6), 1058-1074. e6, 2020 | 56 | 2020 |
| Influence of cyclin type and dose on mitotic entry and progression in the early Drosophila embryo ML McCleland, JA Farrell, PH O'Farrell Journal of Cell Biology 184 (5), 639-646, 2009 | 43 | 2009 |
| Single-cell analysis of shared signatures and transcriptional diversity during zebrafish development A Sur, Y Wang, P Capar, G Margolin, MK Prochaska, JA Farrell Developmental Cell 58 (24), 3028-3047. e12, 2023 | 19 | 2023 |
| Different cyclin types collaborate to reverse the S-phase checkpoint and permit prompt mitosis K Yuan, JA Farrell, PH O’Farrell Journal of Cell Biology 198 (6), 973-980, 2012 | 16 | 2012 |
| Differentiation trajectories of the Hydra nervous system reveal transcriptional regulators of neuronal fate AS Primack, JF Cazet, HM Little, S Mühlbauer, BD Cox, CN David, ... bioRxiv, 2023 | 5 | 2023 |
| Single-cell temporal dynamics reveals the relative contributions of transcription and degradation to cell-type specific gene expression in zebrafish embryos L Fishman, G Nechooshtan, F Erhard, A Regev, JA Farrell, M Rabani bioRxiv, 2023.04. 20.537620, 2023 | 4 | 2023 |
| Gene module reconstruction elucidates cellular differentiation processes and the regulatory logic of specialized secretion Y Wang, J Liu, LY Du, JL Wyss, JA Farrell, AF Schier bioRxiv, 10.1101/2023.12.29.573643, 2023 | | 2023 |
| Germ cells do not progress through spermatogenesis in the infertile zebrafish testis AL Sposato, DR Llewellyn, JM Weber, HL Hollins, MN Schrock, JA Farrell, ... bioRxiv, 2023 | | 2023 |
| An oracle predicts regulators of cell identity JA Farrell Nature 614 (7949), 630-632, 2023 | | 2023 |
| Towards a single cell molecular map for Hydra S Siebert, JA Farrell, J Cazet, Y Abeykoon, R Monroy, CE Juliano INTEGRATIVE AND COMPARATIVE BIOLOGY 58, E212-E212, 2018 | | 2018 |
